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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Non-melanoma skin carcinoma pycnodysostosis
1 gene
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1 of 1 corroborated by 2+ sources
CTSK(2)
0.006 1.000 1.10e-2 1.24e-2 ✓ sig. —
Craniofaciocardiohepatic syndrome Non-melanoma skin carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
AMOTL1(2)
0.006 1.000 1.10e-2 1.24e-2 ✓ sig. —
Acromelic frontonasal dysostosis Non-melanoma skin carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
ZSWIM6(2)
0.006 1.000 1.10e-2 1.24e-2 ✓ sig. Cluster 29 →
Iminoglycinuria Triple negative breast cancer
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A18(2)
0.026 0.200 1.10e-2 1.24e-2 ✓ sig. —
Ischemic heart disease Neurodegeneration peripheral neuropathy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CLCN6(2)
0.006 1.000 1.10e-2 1.24e-2 ✓ sig. —
Ischemic heart disease neurodegeneration, childhood-onset, with hypotonia, respiratory insufficiency, and brain imaging abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
CLCN6(2)
0.006 1.000 1.10e-2 1.24e-2 ✓ sig. —
Ischemic heart disease neurodevelopmental disorder with microcephaly, ataxia, and seizures
1 gene
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1 of 1 corroborated by 2+ sources
SARS1(2)
0.006 1.000 1.10e-2 1.24e-2 ✓ sig. —
Claudication Ischemic heart disease
1 gene
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AGXT2(1)
0.006 1.000 1.10e-2 1.24e-2 ✓ sig. —
COG6-congenital disorder of glycosylation Oligoarticular juvenile idiopathic arthritis
1 gene
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1 of 1 corroborated by 2+ sources
COG6(2)
0.006 1.000 1.10e-2 1.24e-2 ✓ sig. Cluster 311 →
Beta-aminoisobutyric aciduria Ischemic heart disease
1 gene
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1 of 1 corroborated by 2+ sources
AGXT2(3)
0.006 1.000 1.10e-2 1.24e-2 ✓ sig. —
Aplasia cutis-enamel dysplasia syndrome Oligoarticular juvenile idiopathic arthritis
1 gene
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1 of 1 corroborated by 2+ sources
FOSL2(4)
0.006 1.000 1.10e-2 1.24e-2 ✓ sig. —
combined immunodeficiency due to moesin deficiency Oligoarticular juvenile idiopathic arthritis
1 gene
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1 of 1 corroborated by 2+ sources
MSN(2)
0.006 1.000 1.10e-2 1.24e-2 ✓ sig. —
Congenital scalp aplasia cutis-enamel hypoplasia-developmental delay-intellectual disability syndrome Oligoarticular juvenile idiopathic arthritis
1 gene
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1 of 1 corroborated by 2+ sources
FOSL2(2)
0.006 1.000 1.10e-2 1.24e-2 ✓ sig. —
Cytosolic acetoacetyl-coa thiolase deficiency Ischemic heart disease
1 gene
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1 of 1 corroborated by 2+ sources
ACAT2(2)
0.006 1.000 1.10e-2 1.24e-2 ✓ sig. —
Ischemic heart disease Prader-willi-like syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CPE(2)
0.006 1.000 1.10e-2 1.24e-2 ✓ sig. —
cardiomyopathy, dilated, 2k Oligoarticular juvenile idiopathic arthritis
1 gene
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1 of 1 corroborated by 2+ sources
MYZAP(2)
0.006 1.000 1.10e-2 1.24e-2 ✓ sig. Cluster 311 →
Focal glomerulosclerosis Navajo neurohepatopathy
1 gene
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1 of 1 corroborated by 2+ sources
MPV17(3)
0.017 0.333 1.11e-2 1.25e-2 ✓ sig. —
Neutropenia Synovial sarcoma
1 gene
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1 of 1 corroborated by 2+ sources
SS18(2)
0.017 0.333 1.11e-2 1.25e-2 ✓ sig. —
MHC class II deficiency Nasopharyngeal neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
CIITA(2)
0.021 0.250 1.11e-2 1.25e-2 ✓ sig. —
Amelocerebrohypohidrotic syndrome Fatty liver, alcoholic
1 gene
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1 of 1 corroborated by 2+ sources
SLC13A5(3)
0.011 0.500 1.11e-2 1.25e-2 ✓ sig. —
Deafness reticular dysgenesis
1 gene
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1 of 1 corroborated by 2+ sources
AK2(2)
0.006 1.000 1.12e-2 1.26e-2 ✓ sig. —
Deafness Sensorineural deafness with renal dysfunction
1 gene
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BSND(1)
0.006 1.000 1.12e-2 1.26e-2 ✓ sig. —
Deafness Sensorineural hearing loss-spastic quadriplegia–intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
AFG2B(3)
0.006 1.000 1.12e-2 1.26e-2 ✓ sig. —
Congenital heart disease NR2F2 related multiple congenital anomalies/dysmorphic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NR2F2(5)
0.006 1.000 1.12e-2 1.26e-2 ✓ sig. —
Congenital heart disease inflammatory skin and bowel disease, neonatal, 1
1 gene
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1 of 1 corroborated by 2+ sources
ADAM17(3)
0.006 1.000 1.12e-2 1.26e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.