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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
amyotrophic lateral sclerosis type 23 Sarcoidosis
1 gene
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1 of 1 corroborated by 2+ sources
ANXA11(4)
0.006 1.000 1.06e-2 1.20e-2 ✓ sig. —
cardiomyopathy, dilated, 2e Sarcoidosis
1 gene
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1 of 1 corroborated by 2+ sources
JPH2(2)
0.006 1.000 1.06e-2 1.20e-2 ✓ sig. —
primary ciliary dyskinesia 19 Sarcoidosis
1 gene
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1 of 1 corroborated by 2+ sources
DNAAF11(2)
0.006 1.000 1.06e-2 1.20e-2 ✓ sig. —
BBS12-related ciliopathy Sarcoidosis
1 gene
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1 of 1 corroborated by 2+ sources
BBS12(2)
0.006 1.000 1.06e-2 1.20e-2 ✓ sig. —
neurodevelopmental disorder with microcephaly, seizures, and cortical atrophy Sarcoidosis
1 gene
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1 of 1 corroborated by 2+ sources
VARS1(2)
0.006 1.000 1.06e-2 1.20e-2 ✓ sig. —
neurodevelopmental disorder, nonprogressive, with spasticity and transient opisthotonus Sarcoidosis
1 gene
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1 of 1 corroborated by 2+ sources
TNR(2)
0.006 1.000 1.06e-2 1.20e-2 ✓ sig. —
combined immunodeficiency due to ZAP70 deficiency Sarcoidosis
1 gene
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1 of 1 corroborated by 2+ sources
ZAP70(2)
0.006 1.000 1.06e-2 1.20e-2 ✓ sig. —
Hemifacial microsomia Tooth agenesis
1 gene
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1 of 1 corroborated by 2+ sources
FOXI3(2)
0.022 0.250 1.06e-2 1.20e-2 ✓ sig. —
Chromosome 16p11.2 deletion syndrome Idiopathic pulmonary fibrosis
1 gene
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1 of 1 corroborated by 2+ sources
SFTPA1(2)
0.012 0.500 1.06e-2 1.20e-2 ✓ sig. —
Deafness-infertility syndrome nonsyndromic genetic hearing loss
1 gene
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1 of 1 corroborated by 2+ sources
STRC(6)
0.012 0.500 1.06e-2 1.20e-2 ✓ sig. Cluster 26 →
Congenital progressive bone marrow failure-b-cell immunodeficiency-skeletal dysplasia syndrome Diabetic retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
MYSM1(3)
0.006 1.000 1.07e-2 1.20e-2 ✓ sig. —
amyotrophic lateral sclerosis type 9 Diabetic retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
ANG(2)
0.006 1.000 1.07e-2 1.20e-2 ✓ sig. —
Hyperpituitarism Mosaic variegated aneuploidy
1 gene
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1 of 1 corroborated by 2+ sources
MAD1L1(5)
0.038 0.091 1.07e-2 1.20e-2 ✓ sig. —
Bronchopneumonia Peripheral vascular disease
1 gene
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SERTM1(1)
0.026 0.200 1.07e-2 1.20e-2 ✓ sig. —
Cirrhosis Necrosis
1 gene
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1 of 1 corroborated by 2+ sources
KRT18(4)
0.017 0.333 1.07e-2 1.21e-2 ✓ sig. —
Carcinoma Chromosome 5q deletion syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RPS14(2)
0.006 1.000 1.07e-2 1.21e-2 ✓ sig. —
Carcinoma Hyperprolactinemia
1 gene
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1 of 1 corroborated by 2+ sources
PRLR(5)
0.006 1.000 1.07e-2 1.21e-2 ✓ sig. —
Carcinoma Wernicke encephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
TKT(2)
0.006 1.000 1.07e-2 1.21e-2 ✓ sig. —
Carcinoma inherited glutathione synthetase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GSS(2)
0.006 1.000 1.07e-2 1.21e-2 ✓ sig. —
Carcinoma macrothrombocytopenia-lymphedema-developmental delay-facial dysmorphism-camptodactyly syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CDC42(2)
0.006 1.000 1.07e-2 1.21e-2 ✓ sig. —
Carcinoma MERTK-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
MERTK(2)
0.006 1.000 1.07e-2 1.21e-2 ✓ sig. —
Carcinoma Pemphigus foliaceus
1 gene
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1 of 1 corroborated by 2+ sources
RAN(2)
0.006 1.000 1.07e-2 1.21e-2 ✓ sig. —
methylmalonic aciduria and homocystinuria Skin cancer
1 gene
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1 of 1 corroborated by 2+ sources
ZNF143(2)
0.012 0.500 1.08e-2 1.21e-2 ✓ sig. —
Neuroocular syndrome Skin cancer
1 gene
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1 of 1 corroborated by 2+ sources
PRR12(5)
0.012 0.500 1.08e-2 1.21e-2 ✓ sig. —
Nephrotic syndrome nephrotic syndrome, type 13
1 gene
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1 of 1 corroborated by 2+ sources
NUP205(6)
0.006 1.000 1.08e-2 1.22e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.