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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Congenital ichthyosis with hypotrichosis syndrome Orofacial cleft
1 gene
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1 of 1 corroborated by 2+ sources
ST14(2)
0.006 1.000 1.01e-2 1.15e-2 ✓ sig. —
Congenital microtia Craniofacial abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
PRKRA(2)
0.006 1.000 1.01e-2 1.15e-2 ✓ sig. —
ARHGAP29-related non-syndromic orofacial cleft Orofacial cleft
1 gene
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1 of 1 corroborated by 2+ sources
0.006 1.000 1.01e-2 1.15e-2 ✓ sig. —
arrhythmogenic cardiomyopathy with variable ectodermal abnormalities Orofacial cleft
1 gene
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1 of 1 corroborated by 2+ sources
0.006 1.000 1.01e-2 1.15e-2 ✓ sig. —
Athabaskan brainstem dysgenesis Craniofacial abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
HOXA1(4)
0.006 1.000 1.01e-2 1.15e-2 ✓ sig. —
bamforth-lazarus syndrome Orofacial cleft
1 gene
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1 of 1 corroborated by 2+ sources
FOXE1(2)
0.006 1.000 1.01e-2 1.15e-2 ✓ sig. —
basilicata-akhtar syndrome Craniofacial abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
MSL3(3)
0.006 1.000 1.01e-2 1.15e-2 ✓ sig. —
Craniofacial abnormalities Nasodigitoacoustic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GPC4(2)
0.006 1.000 1.01e-2 1.15e-2 ✓ sig. —
oligodontia-cancer predisposition syndrome Orofacial cleft
1 gene
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1 of 1 corroborated by 2+ sources
AXIN2(2)
0.006 1.000 1.01e-2 1.15e-2 ✓ sig. Cluster 63 →
Muggenthaler-chowdhury-chioza syndrome Orofacial cleft
1 gene
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1 of 1 corroborated by 2+ sources
HYAL2(4)
0.006 1.000 1.01e-2 1.15e-2 ✓ sig. —
Cousin syndrome Craniofacial abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
TBX15(3)
0.006 1.000 1.01e-2 1.15e-2 ✓ sig. —
Craniofaciocardiohepatic syndrome Orofacial cleft
1 gene
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1 of 1 corroborated by 2+ sources
AMOTL1(4)
0.006 1.000 1.01e-2 1.15e-2 ✓ sig. —
Coproporphyria Liver disease
1 gene
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CPOX(1)
0.006 1.000 1.02e-2 1.15e-2 ✓ sig. —
Esophageal cancer thrombotic disease
1 gene
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1 of 1 corroborated by 2+ sources
MAST2(2)
0.006 1.000 1.02e-2 1.15e-2 ✓ sig. Cluster 67 →
Liver disease tooth agenesis, selective, 9
1 gene
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1 of 1 corroborated by 2+ sources
GREM2(2)
0.006 1.000 1.02e-2 1.15e-2 ✓ sig. —
Esophageal cancer Vici syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EPG5(5)
0.006 1.000 1.02e-2 1.15e-2 ✓ sig. —
Liver disease polycystic liver disease 1
1 gene
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1 of 1 corroborated by 2+ sources
PRKCSH(2)
0.006 1.000 1.02e-2 1.15e-2 ✓ sig. —
Liver disease severe combined immunodeficiency due to LAT deficiency
1 gene
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1 of 1 corroborated by 2+ sources
LAT(3)
0.006 1.000 1.02e-2 1.15e-2 ✓ sig. —
Esophageal cancer friedreich ataxia
1 gene
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1 of 1 corroborated by 2+ sources
FXN(2)
0.006 1.000 1.02e-2 1.15e-2 ✓ sig. Cluster 67 →
Esophageal cancer glycosylphosphatidylinositol biosynthesis defect 21
1 gene
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1 of 1 corroborated by 2+ sources
PIGU(2)
0.006 1.000 1.02e-2 1.15e-2 ✓ sig. —
Congenital alpha-fetoprotein deficiency Liver disease
1 gene
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1 of 1 corroborated by 2+ sources
AFP(3)
0.006 1.000 1.02e-2 1.15e-2 ✓ sig. —
Abetalipoproteinemia Liver disease
1 gene
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1 of 1 corroborated by 2+ sources
MTTP(2)
0.006 1.000 1.02e-2 1.15e-2 ✓ sig. —
Hereditary coproporphyria Liver disease
1 gene
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1 of 1 corroborated by 2+ sources
CPOX(5)
0.006 1.000 1.02e-2 1.15e-2 ✓ sig. —
hereditary spastic paraplegia 62 Liver disease
1 gene
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1 of 1 corroborated by 2+ sources
ERLIN1(2)
0.006 1.000 1.02e-2 1.15e-2 ✓ sig. —
Hyperopia Trichotillomania
1 gene
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1 of 1 corroborated by 2+ sources
SLITRK1(5)
0.012 0.500 1.02e-2 1.16e-2 ✓ sig. Cluster 386 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.