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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Congenital disorder of deglycosylation Otosclerosis
1 gene
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1 of 1 corroborated by 2+ sources
MAN2C1(5)
0.019 0.333 9.90e-3 1.12e-2 ✓ sig. —
Cerebral atherosclerosis Posterior cortical atrophy
1 gene
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TENT5A(1)
0.040 0.083 1.01e-2 1.14e-2 ✓ sig. —
Large artery stroke propionic acidemia
1 gene
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1 of 1 corroborated by 2+ sources
PCCA(2)
0.013 0.500 1.01e-2 1.15e-2 ✓ sig. —
Bradyopsia Large artery stroke
1 gene
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1 of 1 corroborated by 2+ sources
RGS9(4)
0.013 0.500 1.01e-2 1.15e-2 ✓ sig. —
Aicardi syndrome Large artery stroke
1 gene
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1 of 1 corroborated by 2+ sources
TEAD1(2)
0.013 0.500 1.01e-2 1.15e-2 ✓ sig. —
Large artery stroke Sveinsson chorioretinal atrophy
1 gene
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1 of 1 corroborated by 2+ sources
TEAD1(4)
0.013 0.500 1.01e-2 1.15e-2 ✓ sig. —
Craniofacial abnormalities Rickets, x-linked hypophosphatemic
1 gene
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1 of 1 corroborated by 2+ sources
PHEX(2)
0.006 1.000 1.01e-2 1.15e-2 ✓ sig. —
Craniofacial abnormalities schneckenbecken dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
SLC35D1(3)
0.006 1.000 1.01e-2 1.15e-2 ✓ sig. —
Craniofacial abnormalities spondyloepiphyseal dysplasia, kondo-fu type
1 gene
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1 of 1 corroborated by 2+ sources
MBTPS1(3)
0.006 1.000 1.01e-2 1.15e-2 ✓ sig. —
Bosley-salih-alorainy syndrome Craniofacial abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
HOXA1(3)
0.006 1.000 1.01e-2 1.15e-2 ✓ sig. —
Branchioskeletogenital syndrome Orofacial cleft
1 gene
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1 of 1 corroborated by 2+ sources
CDH11(2)
0.006 1.000 1.01e-2 1.15e-2 ✓ sig. —
Craniofacial abnormalities Pelviscapular dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
TBX15(5)
0.006 1.000 1.01e-2 1.15e-2 ✓ sig. —
Orofacial cleft phytanoyl-CoA hydroxylase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
PHYH(2)
0.006 1.000 1.01e-2 1.15e-2 ✓ sig. —
Orofacial cleft Primary angle-closure glaucoma
1 gene
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1 of 1 corroborated by 2+ sources
SPATA13(4)
0.006 1.000 1.01e-2 1.15e-2 ✓ sig. —
Craniofacial abnormalities FADD-related immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
FADD(3)
0.006 1.000 1.01e-2 1.15e-2 ✓ sig. —
Craniofacial abnormalities Frontonasal dysplasia, severe microphthalmia, severe facial clefting syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ALX1(6)
0.006 1.000 1.01e-2 1.15e-2 ✓ sig. —
Cleft lip and palate, craniofacial dysmorphism, congenital heart defect, hearing loss syndrome Orofacial cleft
1 gene
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1 of 1 corroborated by 2+ sources
HYAL2(3)
0.006 1.000 1.01e-2 1.15e-2 ✓ sig. —
Orofacial cleft Vertebral hypersegmentation with orofacial anomalies
1 gene
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1 of 1 corroborated by 2+ sources
GDF11(3)
0.006 1.000 1.01e-2 1.15e-2 ✓ sig. Cluster 63 →
Craniofacial abnormalities X-linked dominant hypophosphatemic rickets
1 gene
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1 of 1 corroborated by 2+ sources
PHEX(4)
0.006 1.000 1.01e-2 1.15e-2 ✓ sig. —
Craniofacial abnormalities X-linked hypophosphatemia
1 gene
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1 of 1 corroborated by 2+ sources
PHEX(3)
0.006 1.000 1.01e-2 1.15e-2 ✓ sig. —
Craniofacial abnormalities ehlers-danlos syndrome, musculocontractural type 1
1 gene
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1 of 1 corroborated by 2+ sources
CHST14(3)
0.006 1.000 1.01e-2 1.15e-2 ✓ sig. —
Craniofacial abnormalities ehlers-danlos syndrome, spondylodysplastic type, 1
1 gene
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1 of 1 corroborated by 2+ sources
B4GALT7(3)
0.006 1.000 1.01e-2 1.15e-2 ✓ sig. —
15q11q13 microduplication syndrome Craniofacial abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
UBE3A(3)
0.006 1.000 1.01e-2 1.15e-2 ✓ sig. —
Congenital corneal opacity Orofacial cleft
1 gene
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1 of 1 corroborated by 2+ sources
ZFHX4(2)
0.006 1.000 1.01e-2 1.15e-2 ✓ sig. —
Congenital hereditary facial paralysis with variable hearing loss syndrome Craniofacial abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
HOXB1(3)
0.006 1.000 1.01e-2 1.15e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.