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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
b-cell immunodeficiency, distal limb anomalies, and urogenital malformations Myeloid leukemia
1 gene
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1 of 1 corroborated by 2+ sources
TOP2B(2)
0.007 1.000 9.74e-3 1.11e-2 ✓ sig. —
BARD1-related cancer predisposition Neuroblastoma
1 gene
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1 of 1 corroborated by 2+ sources
BARD1(3)
0.007 1.000 9.81e-3 1.11e-2 ✓ sig. —
Neuroblastoma Parenti-mignot neurodevelopmental syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CHD5(5)
0.007 1.000 9.81e-3 1.11e-2 ✓ sig. —
HAND2 related congenital heart defect Neuroblastoma
1 gene
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1 of 1 corroborated by 2+ sources
HAND2(2)
0.007 1.000 9.81e-3 1.11e-2 ✓ sig. —
Hereditary arterial and articular multiple calcification syndrome Neuroblastoma
1 gene
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1 of 1 corroborated by 2+ sources
NT5E(4)
0.007 1.000 9.81e-3 1.11e-2 ✓ sig. —
Neuroblastoma spondyloepimetaphyseal dysplasia with joint laxity, type 3
1 gene
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1 of 1 corroborated by 2+ sources
EXOC6B(2)
0.007 1.000 9.81e-3 1.11e-2 ✓ sig. —
Colobomatous macrophthalmia microcornea syndrome Neuroblastoma
1 gene
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1 of 1 corroborated by 2+ sources
CRIM1(2)
0.007 1.000 9.81e-3 1.11e-2 ✓ sig. Cluster 5 →
Complex regional pain syndrome Secondary malignant neoplasm
1 gene
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KIF2B(1)
0.037 0.125 9.83e-3 1.12e-2 ✓ sig. —
Mouth disease Pernicious anemia
1 gene
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MARCHF1(1)
0.037 0.125 9.83e-3 1.12e-2 ✓ sig. —
Autonomic nervous system disease Inflammatory skin disease
1 gene
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ELMO1(1)
0.013 0.500 9.85e-3 1.12e-2 ✓ sig. —
Intellectual developmental disorder dysmorphic microcephaly Intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
COPB1(2)
0.013 0.500 9.85e-3 1.12e-2 ✓ sig. —
Brody myopathy Hypogonadism
1 gene
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1 of 1 corroborated by 2+ sources
ATP2A1(7)
0.013 0.500 9.85e-3 1.12e-2 ✓ sig. Cluster 54 →
Inflammatory skin disease Neutral lipid storage disease with ichthyosis
1 gene
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1 of 1 corroborated by 2+ sources
ABHD5(3)
0.013 0.500 9.85e-3 1.12e-2 ✓ sig. —
Intellectual disability Ververi-brady syndrome
1 gene
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1 of 1 corroborated by 2+ sources
QRICH1(4)
0.013 0.500 9.85e-3 1.12e-2 ✓ sig. —
Liver neoplasms xeroderma pigmentosum group A
1 gene
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1 of 1 corroborated by 2+ sources
XPA(2)
0.007 1.000 9.87e-3 1.12e-2 ✓ sig. —
Liver neoplasms xeroderma pigmentosum group C
1 gene
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1 of 1 corroborated by 2+ sources
XPC(2)
0.007 1.000 9.87e-3 1.12e-2 ✓ sig. —
Liver neoplasms Pulmonary agenesis
1 gene
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1 of 1 corroborated by 2+ sources
EFNB2(2)
0.007 1.000 9.87e-3 1.12e-2 ✓ sig. Cluster 5 →
autosomal recessive osteopetrosis 8 Liver neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
SNX10(2)
0.007 1.000 9.87e-3 1.12e-2 ✓ sig. —
Bailey-Bloch congenital myopathy Liver neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
STAC3(2)
0.007 1.000 9.87e-3 1.12e-2 ✓ sig. —
Liver neoplasms Native american myopathy
1 gene
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1 of 1 corroborated by 2+ sources
STAC3(3)
0.007 1.000 9.87e-3 1.12e-2 ✓ sig. —
Liver neoplasms ornithine aminotransferase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
OAT(2)
0.007 1.000 9.87e-3 1.12e-2 ✓ sig. —
congenital microcephaly - severe encephalopathy - progressive cerebral atrophy syndrome Liver neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
ASNS(2)
0.007 1.000 9.87e-3 1.12e-2 ✓ sig. —
Liver neoplasms Retinitis pigmentosa, hearing loss, premature aging, short stature, facial dysmorphism syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EXOSC2(5)
0.007 1.000 9.87e-3 1.12e-2 ✓ sig. Cluster 5 →
Genetic generalized epilepsy Liver neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
TNK2(2)
0.007 1.000 9.87e-3 1.12e-2 ✓ sig. —
Male infertility globozoospermia Substance-induced psychosis
1 gene
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1 of 1 corroborated by 2+ sources
PICK1(3)
0.038 0.111 9.90e-3 1.12e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.