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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
colorectal cancer, hereditary nonpolyposis, type 7 Endometrial neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
MLH3(2)
0.008 1.000 8.57e-3 9.90e-3 ✓ sig. —
Charcot-marie-tooth disease Congenital cataract microcephaly intellectual disability syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MED25(6)
0.008 1.000 8.57e-3 9.90e-3 ✓ sig. —
Congenital external auditory canal atresia Endometrial neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
TSHZ1(2)
0.008 1.000 8.57e-3 9.90e-3 ✓ sig. —
Congenital hereditary facial paralysis with variable hearing loss syndrome Endometrial neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
HOXB1(2)
0.008 1.000 8.57e-3 9.90e-3 ✓ sig. —
Congenital lipoid adrenal hyperplasia Endometrial neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
STAR(5)
0.008 1.000 8.57e-3 9.90e-3 ✓ sig. —
Bptf-related intellectual disability facial dysmorphism skeletal anomalies syndrome Endometrial neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
BPTF(2)
0.008 1.000 8.57e-3 9.90e-3 ✓ sig. —
Charcot-marie-tooth disease hereditary spastic paraplegia 11
1 gene
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1 of 1 corroborated by 2+ sources
SPG11(7)
0.008 1.000 8.57e-3 9.90e-3 ✓ sig. —
Charcot-marie-tooth disease nephrotic syndrome 14
1 gene
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1 of 1 corroborated by 2+ sources
SGPL1(2)
0.008 1.000 8.57e-3 9.90e-3 ✓ sig. —
Charcot-marie-tooth disease neuronopathy, distal hereditary motor, autosomal recessive 5
1 gene
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1 of 1 corroborated by 2+ sources
DNAJB2(5)
0.008 1.000 8.57e-3 9.90e-3 ✓ sig. Cluster 15 →
Charcot-marie-tooth disease neuropathy, hereditary sensory and autonomic, type 1A
1 gene
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1 of 1 corroborated by 2+ sources
SPTLC1(3)
0.008 1.000 8.57e-3 9.90e-3 ✓ sig. —
Charcot-marie-tooth disease neuropathy, hereditary sensory and autonomic, type 1C
1 gene
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1 of 1 corroborated by 2+ sources
SPTLC2(2)
0.008 1.000 8.57e-3 9.90e-3 ✓ sig. —
Charcot-marie-tooth disease neuropathy, hereditary sensory, type 1F
1 gene
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1 of 1 corroborated by 2+ sources
ATL3(2)
0.008 1.000 8.57e-3 9.90e-3 ✓ sig. —
Developmental delay with hypotonia and impaired language Endometrial neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
FBXW7(5)
0.008 1.000 8.57e-3 9.90e-3 ✓ sig. —
Charcot-marie-tooth disease Riley-day syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ELP1(3)
0.008 1.000 8.57e-3 9.90e-3 ✓ sig. —
Endometrial neoplasms Serrated polyposis
1 gene
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1 of 1 corroborated by 2+ sources
RNF43(2)
0.008 1.000 8.57e-3 9.90e-3 ✓ sig. —
Endometrial neoplasms sessile serrated polyposis cancer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RNF43(2)
0.008 1.000 8.57e-3 9.90e-3 ✓ sig. —
Endometrial neoplasms spinocerebellar ataxia, autosomal recessive 23
1 gene
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1 of 1 corroborated by 2+ sources
TDP2(2)
0.008 1.000 8.57e-3 9.90e-3 ✓ sig. —
Blepharoptosis Corticobasal degeneration
1 gene
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1 of 1 corroborated by 2+ sources
SOS1(2)
0.038 0.143 8.61e-3 9.94e-3 ✓ sig. Cluster 42 →
Myopia Rothmund-Thomson syndrome type 1
1 gene
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1 of 1 corroborated by 2+ sources
ANAPC1(2)
0.007 1.000 8.64e-3 9.97e-3 ✓ sig. —
Cerebrofacial arteriovenous metameric syndrome Myopia
1 gene
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GNA14(1)
0.007 1.000 8.64e-3 9.97e-3 ✓ sig. —
Myopia Uridine-cytidineuria
1 gene
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1 of 1 corroborated by 2+ sources
SLC28A1(3)
0.007 1.000 8.64e-3 9.97e-3 ✓ sig. —
Bone marrow failure and diabetes mellitus syndrome Myopia
1 gene
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1 of 1 corroborated by 2+ sources
DUT(4)
0.007 1.000 8.64e-3 9.97e-3 ✓ sig. Cluster 12 →
cardiomyopathy, dilated, 2j Myopia
1 gene
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1 of 1 corroborated by 2+ sources
FLII(2)
0.007 1.000 8.64e-3 9.97e-3 ✓ sig. Cluster 12 →
glycogen storage disease V Myopia
1 gene
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1 of 1 corroborated by 2+ sources
PYGM(2)
0.007 1.000 8.64e-3 9.97e-3 ✓ sig. —
Congenital ichthyosis with hypotrichosis syndrome Myopia
1 gene
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ST14(1)
0.007 1.000 8.64e-3 9.97e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.