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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Congenital scalp aplasia cutis-enamel hypoplasia-developmental delay-intellectual disability syndrome Juvenile arthritis
1 gene
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1 of 1 corroborated by 2+ sources
FOSL2(2)
0.008 1.000 8.44e-3 9.78e-3 ✓ sig. —
craniosynostosis and dental anomalies Ovarian neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
IL11RA(2)
0.008 1.000 8.51e-3 9.85e-3 ✓ sig. —
extraoral halitosis due to methanethiol oxidase deficiency Ovarian neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
0.008 1.000 8.51e-3 9.85e-3 ✓ sig. Cluster 5 →
familial ovarian cancer Ovarian neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
BRIP1(2)
0.008 1.000 8.51e-3 9.85e-3 ✓ sig. —
fanconi anemia complementation group j Ovarian neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
BRIP1(2)
0.008 1.000 8.51e-3 9.85e-3 ✓ sig. —
Ovarian neoplasms RAD51D-related cancer predisposition
1 gene
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1 of 1 corroborated by 2+ sources
RAD51D(2)
0.008 1.000 8.51e-3 9.85e-3 ✓ sig. —
Ovarian neoplasms X-linked dominant chondrodysplasia chassaing-lacombe type
1 gene
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1 of 1 corroborated by 2+ sources
HDAC6(5)
0.008 1.000 8.51e-3 9.85e-3 ✓ sig. —
Brunet-wagner neurodevelopmental syndrome Ovarian neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
RBL2(5)
0.008 1.000 8.51e-3 9.85e-3 ✓ sig. —
complex neurodevelopmental disorder with motor features Dysarthria
1 gene
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1 of 1 corroborated by 2+ sources
KMT2B(2)
0.036 0.167 8.54e-3 9.89e-3 ✓ sig. —
Hypoxia Very long chain acyl-coa dehydrogenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ACADVL(6)
0.027 0.250 8.55e-3 9.89e-3 ✓ sig. —
Hereditary motor and sensory neuropathies Peho syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KIF1A(2)
0.015 0.500 8.55e-3 9.90e-3 ✓ sig. —
Cerebellar, ocular, craniofacial, and genital syndrome Interstitial lung disease
1 gene
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1 of 1 corroborated by 2+ sources
NBEA(2)
0.015 0.500 8.55e-3 9.90e-3 ✓ sig. —
Cerebellar, ocular, craniofacial, and genital syndrome Urinary bladder cancer
1 gene
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1 of 1 corroborated by 2+ sources
NBEA(2)
0.015 0.500 8.55e-3 9.90e-3 ✓ sig. —
Chromosome 16p11.2 deletion syndrome Interstitial lung disease
1 gene
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1 of 1 corroborated by 2+ sources
SFTPA1(5)
0.015 0.500 8.55e-3 9.90e-3 ✓ sig. —
Charcot-marie-tooth disease Charcot-Marie-Tooth disease axonal type 2CC
1 gene
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1 of 1 corroborated by 2+ sources
NEFH(5)
0.008 1.000 8.57e-3 9.90e-3 ✓ sig. —
Charcot-marie-tooth disease Charcot-Marie-Tooth disease type 4B2
1 gene
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1 of 1 corroborated by 2+ sources
SBF2(7)
0.008 1.000 8.57e-3 9.90e-3 ✓ sig. —
Charcot-marie-tooth disease Charcot-Marie-tooth disease, axonal, type 2DD
1 gene
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1 of 1 corroborated by 2+ sources
ATP1A1(6)
0.008 1.000 8.57e-3 9.90e-3 ✓ sig. —
Charcot-marie-tooth disease Charcot-Marie-Tooth disease, axonal, type 2FF
1 gene
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1 of 1 corroborated by 2+ sources
CADM3(5)
0.008 1.000 8.57e-3 9.90e-3 ✓ sig. —
Charcot-marie-tooth disease Charcot-Marie-Tooth disease, demyelinating, type 1J
1 gene
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1 of 1 corroborated by 2+ sources
ITPR3(5)
0.008 1.000 8.57e-3 9.90e-3 ✓ sig. —
Charcot-marie-tooth disease PHARC syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ABHD12(2)
0.008 1.000 8.57e-3 9.90e-3 ✓ sig. —
Charcot-marie-tooth disease Vertical talus
1 gene
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1 of 1 corroborated by 2+ sources
HOXD10(3)
0.008 1.000 8.57e-3 9.90e-3 ✓ sig. —
Charcot-marie-tooth disease X-linked hereditary motor and sensory neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
DRP2(3)
0.008 1.000 8.57e-3 9.90e-3 ✓ sig. Cluster 15 →
Axonal neuropathy with neuromyotonia Charcot-marie-tooth disease
1 gene
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1 of 1 corroborated by 2+ sources
HINT1(5)
0.008 1.000 8.57e-3 9.90e-3 ✓ sig. —
Bilateral congenital vertical talus Charcot-marie-tooth disease
1 gene
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1 of 1 corroborated by 2+ sources
HOXD10(2)
0.008 1.000 8.57e-3 9.90e-3 ✓ sig. —
Endometrial neoplasms fructose-1,6-bisphosphatase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
FBP1(2)
0.008 1.000 8.57e-3 9.90e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.