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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Congenital brain dysgenesis due to glutamine synthetase deficiency Psychotic disorders
1 gene
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1 of 1 corroborated by 2+ sources
GLUL(5)
0.008 1.000 8.12e-3 9.42e-3 ✓ sig. —
Intellectual disability, anterior maxillary protrusion, and strabismus Psychotic disorders
1 gene
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1 of 1 corroborated by 2+ sources
SOBP(2)
0.008 1.000 8.12e-3 9.42e-3 ✓ sig. —
Anterior maxillary protrusion-strabismus-intellectual disability syndrome Psychotic disorders
1 gene
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1 of 1 corroborated by 2+ sources
SOBP(2)
0.008 1.000 8.12e-3 9.42e-3 ✓ sig. —
Diencephalic mesencephalic junction dysplasia Lupus nephritis
1 gene
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1 of 1 corroborated by 2+ sources
GSX2(5)
0.022 0.333 8.16e-3 9.47e-3 ✓ sig. —
Brain disease Carnitine palmitoyltransferase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CPT2(8)
0.022 0.333 8.16e-3 9.47e-3 ✓ sig. —
Navajo neurohepatopathy Proteinuria
1 gene
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1 of 1 corroborated by 2+ sources
MPV17(3)
0.022 0.333 8.16e-3 9.47e-3 ✓ sig. —
Dent disease Proteinuria
1 gene
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1 of 1 corroborated by 2+ sources
CLCN5(7)
0.022 0.333 8.16e-3 9.47e-3 ✓ sig. —
Congenital disorder of deglycosylation Hyperinsulinism
1 gene
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1 of 1 corroborated by 2+ sources
NEIL1(2)
0.022 0.333 8.16e-3 9.47e-3 ✓ sig. —
Brugada syndrome Early-onset progressive encephalopathy-hearing loss-pons hypoplasia-brain atrophy syndrome
1 gene
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LIPT2(1)
0.015 0.500 8.17e-3 9.48e-3 ✓ sig. —
17 alpha-hydroxyprogesterone aldolase deficiency Carpal tunnel syndrome
1 gene
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1 of 1 corroborated by 2+ sources
AKR1C2(2)
0.015 0.500 8.17e-3 9.48e-3 ✓ sig. —
Congenital vertical talus Mouth neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
HOXD10(5)
0.015 0.500 8.17e-3 9.48e-3 ✓ sig. —
developmental and epileptic encephalopathy, 41 Vitiligo
1 gene
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1 of 1 corroborated by 2+ sources
SLC1A2(2)
0.008 1.000 8.18e-3 9.49e-3 ✓ sig. —
isolated sulfite oxidase deficiency Vitiligo
1 gene
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1 of 1 corroborated by 2+ sources
SUOX(2)
0.008 1.000 8.18e-3 9.49e-3 ✓ sig. Cluster 39 →
Charcot-Marie-Tooth disease, demyelinating, type 1J Vitiligo
1 gene
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1 of 1 corroborated by 2+ sources
ITPR3(2)
0.008 1.000 8.18e-3 9.49e-3 ✓ sig. Cluster 39 →
Chromosomal instability Lymphedema
1 gene
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1 of 1 corroborated by 2+ sources
KIF11(2)
0.042 0.125 8.28e-3 9.61e-3 ✓ sig. —
Azoospermia Cryptospermia
1 gene
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DMC1(1)
0.028 0.250 8.29e-3 9.61e-3 ✓ sig. —
Hyperuricemia Infantile liver failure
1 gene
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1 of 1 corroborated by 2+ sources
SCYL1(2)
0.015 0.500 8.30e-3 9.62e-3 ✓ sig. —
Biliary cirrhosis immunodeficiency 19
1 gene
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1 of 1 corroborated by 2+ sources
CD3D(2)
0.008 1.000 8.31e-3 9.63e-3 ✓ sig. —
immunodeficiency, common variable, 7 Systemic sclerosis
1 gene
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1 of 1 corroborated by 2+ sources
CR2(2)
0.008 1.000 8.31e-3 9.63e-3 ✓ sig. —
Biliary cirrhosis Inner ear disease
1 gene
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CENPB(1)
0.008 1.000 8.31e-3 9.63e-3 ✓ sig. —
Biliary cirrhosis Childhood-onset sensorineural hearing impairment
1 gene
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1 of 1 corroborated by 2+ sources
PRORP(2)
0.008 1.000 8.31e-3 9.63e-3 ✓ sig. —
Choreoacanthocytosis Vascular dementia
1 gene
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1 of 1 corroborated by 2+ sources
VPS13A(3)
0.008 1.000 8.31e-3 9.63e-3 ✓ sig. —
Ataxia-pancytopenia syndrome Systemic sclerosis
1 gene
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1 of 1 corroborated by 2+ sources
SAMD9L(5)
0.008 1.000 8.31e-3 9.63e-3 ✓ sig. —
autosomal systemic lupus erythematosus type 16 Systemic sclerosis
1 gene
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1 of 1 corroborated by 2+ sources
0.008 1.000 8.31e-3 9.63e-3 ✓ sig. Cluster 25 →
Beukes hip dysplasia Systemic sclerosis
1 gene
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1 of 1 corroborated by 2+ sources
UFSP2(2)
0.008 1.000 8.31e-3 9.63e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.