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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
intellectual developmental disorder, autosomal recessive 75, with neuropsychiatric features and variant lissencephaly Keratoconus
1 gene
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1 of 1 corroborated by 2+ sources
PIDD1(2)
0.009 1.000 7.21e-3 8.52e-3 ✓ sig. —
Isolated follicle-stimulating hormone deficiency Male infertility
1 gene
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1 of 1 corroborated by 2+ sources
FSHB(2)
0.009 1.000 7.21e-3 8.52e-3 ✓ sig. —
Congenital alpha-2-antiplasmin deficiency Hodgkin lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
0.009 1.000 7.21e-3 8.52e-3 ✓ sig. —
Congenital cataract severe neonatal hepatopathy developmental delay syndrome Dyslexia
1 gene
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1 of 1 corroborated by 2+ sources
CYP51A1(3)
0.009 1.000 7.21e-3 8.52e-3 ✓ sig. —
Dyslexia Tongue disorder
1 gene
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ESRRG(1)
0.009 1.000 7.21e-3 8.52e-3 ✓ sig. —
Hodgkin lymphoma Tritanopia
1 gene
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1 of 1 corroborated by 2+ sources
OPN1SW(4)
0.009 1.000 7.21e-3 8.52e-3 ✓ sig. —
Hodgkin lymphoma severe combined immunodeficiency due to CORO1A deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CORO1A(2)
0.009 1.000 7.21e-3 8.52e-3 ✓ sig. —
Male infertility spermatogenic failure 5
1 gene
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1 of 1 corroborated by 2+ sources
AURKC(3)
0.009 1.000 7.21e-3 8.52e-3 ✓ sig. —
Keratoconus temtamy preaxial brachydactyly syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CHSY1(2)
0.009 1.000 7.21e-3 8.52e-3 ✓ sig. —
Male infertility primary ciliary dyskinesia 1
1 gene
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1 of 1 corroborated by 2+ sources
DNAI1(2)
0.009 1.000 7.21e-3 8.52e-3 ✓ sig. —
Male infertility primary ciliary dyskinesia 23
1 gene
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1 of 1 corroborated by 2+ sources
ODAD2(2)
0.009 1.000 7.21e-3 8.52e-3 ✓ sig. —
Dyslexia primary ciliary dyskinesia 25
1 gene
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1 of 1 corroborated by 2+ sources
DNAAF4(4)
0.009 1.000 7.21e-3 8.52e-3 ✓ sig. —
19p13.3 microduplication syndrome Hodgkin lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
NFIX(3)
0.009 1.000 7.21e-3 8.52e-3 ✓ sig. —
Alpha-2-plasmin inhibitor deficiency Hodgkin lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
0.009 1.000 7.21e-3 8.52e-3 ✓ sig. —
Hodgkin lymphoma Malan syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NFIX(6)
0.009 1.000 7.21e-3 8.52e-3 ✓ sig. —
Hodgkin lymphoma marshall-smith syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NFIX(2)
0.009 1.000 7.21e-3 8.52e-3 ✓ sig. —
Male infertility MCM9-related gametogenic failure
1 gene
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1 of 1 corroborated by 2+ sources
MCM9(3)
0.009 1.000 7.21e-3 8.52e-3 ✓ sig. —
Dyslexia microcephaly 26, primary, autosomal dominant
1 gene
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1 of 1 corroborated by 2+ sources
LMNB1(2)
0.009 1.000 7.21e-3 8.52e-3 ✓ sig. —
autosomal agammaglobulinemia Hodgkin lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
TCF3(2)
0.009 1.000 7.21e-3 8.52e-3 ✓ sig. —
Keratoconus neutral lipid storage myopathy
1 gene
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1 of 1 corroborated by 2+ sources
PNPLA2(2)
0.009 1.000 7.21e-3 8.52e-3 ✓ sig. —
Chondromalacia Vascular brain injury
1 gene
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0.045 0.125 7.25e-3 8.56e-3 ✓ sig. —
Chromosomal instability Papillary thyroid cancer
1 gene
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PPP2R5C(1)
0.045 0.125 7.25e-3 8.56e-3 ✓ sig. —
Hereditary chronic pancreatitis Spermatogenic failure, y-linked
1 gene
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1 of 1 corroborated by 2+ sources
CFTR(2)
0.045 0.125 7.25e-3 8.56e-3 ✓ sig. —
Bell's palsy Intellectual developmental disorder seizures speech
1 gene
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1 of 1 corroborated by 2+ sources
NTNG2(2)
0.017 0.500 7.26e-3 8.57e-3 ✓ sig. —
Autoimmune interstitial lung disease-arthritis syndrome Bell's palsy
1 gene
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1 of 1 corroborated by 2+ sources
NLRP12(2)
0.017 0.500 7.26e-3 8.57e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.