Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Chondromyxoid fibroma Spinocerebellar ataxia
1 gene
Show details
1 of 1 corroborated by 2+ sources
GRM1(6)
0.010 1.000 6.75e-3 8.03e-3 ✓ sig. —
Lactic acidosis Spinocerebellar ataxia
1 gene
Show details
1 of 1 corroborated by 2+ sources
PMPCA(4)
0.010 1.000 6.75e-3 8.03e-3 ✓ sig. —
granulocytopenia with immunoglobulin abnormality Spinocerebellar ataxia
1 gene
Show details
1 of 1 corroborated by 2+ sources
HYOU1(3)
0.010 1.000 6.75e-3 8.03e-3 ✓ sig. —
Spinocerebellar ataxia spinocerebellar ataxia type 13
1 gene
Show details
1 of 1 corroborated by 2+ sources
KCNC3(6)
0.010 1.000 6.75e-3 8.03e-3 ✓ sig. Cluster 79 →
Spinocerebellar ataxia spinocerebellar ataxia type 42
1 gene
Show details
1 of 1 corroborated by 2+ sources
CACNA1G(6)
0.010 1.000 6.75e-3 8.03e-3 ✓ sig. Cluster 79 →
Spinocerebellar ataxia spinocerebellar ataxia type 5
1 gene
Show details
1 of 1 corroborated by 2+ sources
SPTBN2(7)
0.010 1.000 6.75e-3 8.03e-3 ✓ sig. —
Spinocerebellar ataxia spinocerebellar ataxia, autosomal recessive 23
1 gene
Show details
1 of 1 corroborated by 2+ sources
TDP2(6)
0.010 1.000 6.75e-3 8.03e-3 ✓ sig. Cluster 79 →
Spinocerebellar ataxia spinocerebellar ataxia, autosomal recessive 27
1 gene
Show details
1 of 1 corroborated by 2+ sources
GDAP2(5)
0.010 1.000 6.75e-3 8.03e-3 ✓ sig. Cluster 79 →
Spinocerebellar ataxia spinocerebellar ataxia, autosomal recessive 28
1 gene
Show details
1 of 1 corroborated by 2+ sources
THG1L(5)
0.010 1.000 6.75e-3 8.03e-3 ✓ sig. Cluster 79 →
Ataxia with oculomotor apraxia and hypoalbuminemia Spinocerebellar ataxia
1 gene
Show details
1 of 1 corroborated by 2+ sources
APTX(2)
0.010 1.000 6.75e-3 8.03e-3 ✓ sig. —
Ataxia-pancytopenia syndrome Spinocerebellar ataxia
1 gene
Show details
1 of 1 corroborated by 2+ sources
SAMD9L(5)
0.010 1.000 6.75e-3 8.03e-3 ✓ sig. —
autosomal dominant cerebellar ataxia Spinocerebellar ataxia
1 gene
Show details
1 of 1 corroborated by 2+ sources
NPTX1(4)
0.010 1.000 6.75e-3 8.03e-3 ✓ sig. —
autosomal recessive cerebellar ataxia Spinocerebellar ataxia
1 gene
Show details
1 of 1 corroborated by 2+ sources
CWF19L1(6)
0.010 1.000 6.75e-3 8.03e-3 ✓ sig. Cluster 79 →
autosomal recessive spinocerebellar ataxia 10 Spinocerebellar ataxia
1 gene
Show details
1 of 1 corroborated by 2+ sources
ANO10(6)
0.010 1.000 6.75e-3 8.03e-3 ✓ sig. —
autosomal recessive spinocerebellar ataxia 14 Spinocerebellar ataxia
1 gene
Show details
1 of 1 corroborated by 2+ sources
SPTBN2(7)
0.010 1.000 6.75e-3 8.03e-3 ✓ sig. —
autosomal recessive spinocerebellar ataxia 20 Spinocerebellar ataxia
1 gene
Show details
1 of 1 corroborated by 2+ sources
SNX14(6)
0.010 1.000 6.75e-3 8.03e-3 ✓ sig. —
Kleine-levin syndrome Mobius syndrome
1 gene
Show details
PLXND1(1)
0.045 0.143 6.80e-3 8.08e-3 ✓ sig. —
Circadian rhythm sleep disorder Diabetic ketoacidosis
1 gene
Show details
CNTN5(1)
0.026 0.333 6.80e-3 8.08e-3 ✓ sig. —
Growth disorder Smith-magenis syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
RAI1(7)
0.026 0.333 6.80e-3 8.08e-3 ✓ sig. —
Benign prostatic hyperplasia Throat disease
1 gene
Show details
GATA5(1)
0.026 0.333 6.80e-3 8.08e-3 ✓ sig. —
C1q deficiency Ovarian cysts
1 gene
Show details
1 of 1 corroborated by 2+ sources
C1QB(6)
0.026 0.333 6.80e-3 8.08e-3 ✓ sig. —
Bipolar depression Blepharospasm
1 gene
Show details
1 of 1 corroborated by 2+ sources
DRD5(3)
0.009 1.000 6.82e-3 8.09e-3 ✓ sig. —
Bipolar depression combined immunodeficiency due to STK4 deficiency
1 gene
Show details
1 of 1 corroborated by 2+ sources
STK4(2)
0.009 1.000 6.82e-3 8.09e-3 ✓ sig. —
Bipolar depression hereditary sensory and autonomic neuropathy type 4
1 gene
Show details
1 of 1 corroborated by 2+ sources
NTRK1(2)
0.009 1.000 6.82e-3 8.09e-3 ✓ sig. —
Aromatic l-amino-acid decarboxylase deficiency Bipolar depression
1 gene
Show details
1 of 1 corroborated by 2+ sources
DDC(3)
0.009 1.000 6.82e-3 8.09e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.