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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Fatty liver, alcoholic Oxysterol accumulation disorder
1 gene
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1 of 1 corroborated by 2+ sources
CYP7B1(2)
0.011 1.000 5.59e-3 6.78e-3 ✓ sig. —
Abetalipoproteinemia Fatty liver, alcoholic
1 gene
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1 of 1 corroborated by 2+ sources
MTTP(2)
0.011 1.000 5.59e-3 6.78e-3 ✓ sig. —
Fatty liver, alcoholic long chain 3-hydroxyacyl-coa dehydrogenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
HADHA(2)
0.011 1.000 5.59e-3 6.78e-3 ✓ sig. —
Fatty liver, alcoholic mitochondrial trifunctional protein deficiency
1 gene
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1 of 1 corroborated by 2+ sources
HADHB(2)
0.011 1.000 5.59e-3 6.78e-3 ✓ sig. —
Fatty liver, alcoholic Mucoepithelial dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
SREBF1(2)
0.011 1.000 5.59e-3 6.78e-3 ✓ sig. —
Fatty liver, alcoholic Urban-schosser-spohr syndrome
1 gene
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SREBF1(1)
0.011 1.000 5.59e-3 6.78e-3 ✓ sig. —
Fatty liver, alcoholic X-linked ichthyosis with steryl-sulfatase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
STS(2)
0.011 1.000 5.59e-3 6.78e-3 ✓ sig. —
Corticosteroid-binding globulin deficiency Fatty liver, alcoholic
1 gene
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1 of 1 corroborated by 2+ sources
0.011 1.000 5.59e-3 6.78e-3 ✓ sig. —
Congenital myasthenic syndrome Cystine urolithiasis
1 gene
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1 of 1 corroborated by 2+ sources
PREPL(2)
0.031 0.333 5.64e-3 6.85e-3 ✓ sig. —
Mitochondrial dna depletion syndrome Navajo neurohepatopathy
1 gene
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1 of 1 corroborated by 2+ sources
MPV17(5)
0.031 0.333 5.64e-3 6.85e-3 ✓ sig. —
Desbuquois dysplasia Duchenne muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
XYLT1(4)
0.031 0.333 5.64e-3 6.85e-3 ✓ sig. —
Brain aneurysm Cerebellar vermis atrophy
1 gene
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1 of 1 corroborated by 2+ sources
SYN3(2)
0.011 1.000 5.65e-3 6.86e-3 ✓ sig. —
Brain aneurysm primary ciliary dyskinesia 12
1 gene
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1 of 1 corroborated by 2+ sources
RSPH9(2)
0.011 1.000 5.65e-3 6.86e-3 ✓ sig. —
Brain aneurysm Tongue disorder
1 gene
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ESRRG(1)
0.011 1.000 5.65e-3 6.86e-3 ✓ sig. —
Brain aneurysm Uterine benign neoplasm
1 gene
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BET1L(1)
0.011 1.000 5.65e-3 6.86e-3 ✓ sig. —
Brain aneurysm holocarboxylase synthetase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
HLCS(2)
0.011 1.000 5.65e-3 6.86e-3 ✓ sig. —
Brain aneurysm Gaucher disease-ophthalmoplegia-cardiovascular calcification syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GBA1(4)
0.011 1.000 5.65e-3 6.86e-3 ✓ sig. —
Obstructive azoospermia Sinusitis
1 gene
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1 of 1 corroborated by 2+ sources
CFTR(2)
0.038 0.250 5.70e-3 6.92e-3 ✓ sig. —
Sialolithiasis Treacher collins syndrome
1 gene
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1 of 1 corroborated by 2+ sources
POLR1D(8)
0.038 0.250 5.70e-3 6.92e-3 ✓ sig. —
Congenital chloride diarrhea Iron metabolism disorder
1 gene
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1 of 1 corroborated by 2+ sources
MON1A(2)
0.038 0.250 5.70e-3 6.92e-3 ✓ sig. —
Congenital cataract hearing loss developmental delay syndrome Partial epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
SLC33A1(3)
0.022 0.500 5.71e-3 6.93e-3 ✓ sig. —
Conjunctival disease Salivary gland neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
DAPK1(2)
0.022 0.500 5.71e-3 6.93e-3 ✓ sig. —
Diaphragm disease Salivary gland neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
WNT5B(2)
0.022 0.500 5.71e-3 6.93e-3 ✓ sig. —
Macular dystrophy Thyroid hormone resistance
1 gene
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1 of 1 corroborated by 2+ sources
THRB(5)
0.022 0.500 5.71e-3 6.93e-3 ✓ sig. —
Intellectual developmental disorder, x-linked Vacterl-hydrocephalus syndrome
1 gene
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FANCB(1)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.