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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Aplasia cutis congenita with epibulbar dermoids Oocyte maturation defect
1 gene
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1 of 1 corroborated by 2+ sources
NLRP5(4)
0.036 0.333 4.86e-3 5.99e-3 ✓ sig. —
Male infertility testicular dysgenesis Oocyte maturation defect
1 gene
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1 of 1 corroborated by 2+ sources
CHEK1(3)
0.036 0.333 4.86e-3 5.99e-3 ✓ sig. —
Chagas cardiomyopathy Rotor syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLCO1B1(4)
0.036 0.333 4.86e-3 5.99e-3 ✓ sig. —
Chagas cardiomyopathy Chudley-mccullough syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SPTB(2)
0.036 0.333 4.86e-3 5.99e-3 ✓ sig. Cluster 400 →
Amblyopia Thiamine-responsive maple syrup urine disease
1 gene
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1 of 1 corroborated by 2+ sources
BCKDHB(2)
0.036 0.333 4.86e-3 5.99e-3 ✓ sig. —
Encephalitis Spondyloepimetaphyseal dysplasia
1 gene
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ABCD1(1)
0.036 0.333 4.86e-3 5.99e-3 ✓ sig. —
Common variable immunodeficiency IL21-related infantile inflammatory bowel disease
1 gene
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1 of 1 corroborated by 2+ sources
IL21(4)
0.013 1.000 4.87e-3 5.99e-3 ✓ sig. —
Common variable immunodeficiency immunodeficiency, common variable, 10
1 gene
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1 of 1 corroborated by 2+ sources
NFKB2(3)
0.013 1.000 4.87e-3 5.99e-3 ✓ sig. —
Common variable immunodeficiency immunodeficiency, common variable, 14
1 gene
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1 of 1 corroborated by 2+ sources
IRF2BP2(2)
0.013 1.000 4.87e-3 5.99e-3 ✓ sig. —
Common variable immunodeficiency immunodeficiency, common variable, 2
1 gene
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1 of 1 corroborated by 2+ sources
0.013 1.000 4.87e-3 5.99e-3 ✓ sig. —
Common variable immunodeficiency immunodeficiency, common variable, 3
1 gene
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1 of 1 corroborated by 2+ sources
CD19(5)
0.013 1.000 4.87e-3 5.99e-3 ✓ sig. —
Common variable immunodeficiency immunodeficiency, common variable, 4
1 gene
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1 of 1 corroborated by 2+ sources
0.013 1.000 4.87e-3 5.99e-3 ✓ sig. Cluster 39 →
Common variable immunodeficiency immunodeficiency, common variable, 5
1 gene
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1 of 1 corroborated by 2+ sources
MS4A1(4)
0.013 1.000 4.87e-3 5.99e-3 ✓ sig. —
Common variable immunodeficiency immunodeficiency, common variable, 6
1 gene
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1 of 1 corroborated by 2+ sources
CD81(5)
0.013 1.000 4.87e-3 5.99e-3 ✓ sig. Cluster 39 →
Common variable immunodeficiency immunodeficiency, common variable, 7
1 gene
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1 of 1 corroborated by 2+ sources
CR2(5)
0.013 1.000 4.87e-3 5.99e-3 ✓ sig. Cluster 39 →
Contact dermatitis inherited glutathione synthetase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GSS(3)
0.013 1.000 4.87e-3 5.99e-3 ✓ sig. —
Common variable immunodeficiency isolated sulfite oxidase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SUOX(2)
0.013 1.000 4.87e-3 5.99e-3 ✓ sig. Cluster 39 →
Common variable immunodeficiency severe combined immunodeficiency due to DCLRE1C deficiency
1 gene
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1 of 1 corroborated by 2+ sources
DCLRE1C(2)
0.013 1.000 4.87e-3 5.99e-3 ✓ sig. —
Contact dermatitis stankiewicz-isidor syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PSMD12(3)
0.013 1.000 4.87e-3 5.99e-3 ✓ sig. —
Anterior pituitary function deficiency with variable immunodeficiency Common variable immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
NFKB2(4)
0.013 1.000 4.87e-3 5.99e-3 ✓ sig. —
Antibody deficiency Common variable immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
CD19(4)
0.013 1.000 4.87e-3 5.99e-3 ✓ sig. —
Hyperemesis gravidarum Mouth disease
1 gene
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1 of 1 corroborated by 2+ sources
GDF15(4)
0.043 0.250 4.93e-3 6.05e-3 ✓ sig. —
Dermatitis Diffuse palmoplantar keratoderma
1 gene
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1 of 1 corroborated by 2+ sources
DSG1(3)
0.025 0.500 4.93e-3 6.05e-3 ✓ sig. —
Dejerine-sottas disease Distal amyotrophy
1 gene
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DHTKD1(1)
0.025 0.500 4.93e-3 6.05e-3 ✓ sig. —
Dejerine-sottas disease Lysine metabolism disorder
1 gene
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DHTKD1(1)
0.025 0.500 4.93e-3 6.05e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.