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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Gestational trophoblastic disease Psoriatic arthritis
1 gene
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1 of 1 corroborated by 2+ sources
POU5F1(2)
0.014 1.000 4.74e-3 5.86e-3 ✓ sig. —
Carnitine deficiency Psoriatic arthritis
1 gene
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1 of 1 corroborated by 2+ sources
SLC22A5(3)
0.014 1.000 4.74e-3 5.86e-3 ✓ sig. —
Allergic contact dermatitis immunodeficiency 19
1 gene
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1 of 1 corroborated by 2+ sources
CD3D(3)
0.014 1.000 4.74e-3 5.86e-3 ✓ sig. —
Intellectual developmental disorder language neurodegenerative Psoriatic arthritis
1 gene
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1 of 1 corroborated by 2+ sources
NR4A2(5)
0.014 1.000 4.74e-3 5.86e-3 ✓ sig. —
Allergic contact dermatitis thrombocytopenia 3
1 gene
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1 of 1 corroborated by 2+ sources
FYB1(3)
0.014 1.000 4.74e-3 5.86e-3 ✓ sig. —
Allergic contact dermatitis Cervicitis
1 gene
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1 of 1 corroborated by 2+ sources
IL32(2)
0.014 1.000 4.74e-3 5.86e-3 ✓ sig. —
Allergic contact dermatitis Congenital small-platelet thrombocytopenia
1 gene
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1 of 1 corroborated by 2+ sources
FYB1(3)
0.014 1.000 4.74e-3 5.86e-3 ✓ sig. —
Atypical femoral fracture Congenital radioulnar synostosis
1 gene
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1 of 1 corroborated by 2+ sources
SMAD6(2)
0.026 0.500 4.80e-3 5.92e-3 ✓ sig. —
Sandhoff disease Spinal muscular atrophy
1 gene
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1 of 1 corroborated by 2+ sources
HEXB(7)
0.026 0.500 4.80e-3 5.92e-3 ✓ sig. —
Odontochondrodysplasia 2 with hearing loss and diabetes Spinal muscular atrophy
1 gene
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1 of 1 corroborated by 2+ sources
PLEKHG5(3)
0.026 0.500 4.80e-3 5.92e-3 ✓ sig. —
Autoimmune interstitial lung disease-arthritis syndrome Autoinflammatory syndrome
1 gene
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NLRP12(1)
0.026 0.500 4.80e-3 5.92e-3 ✓ sig. —
Autoinflammatory syndrome with pyogenic bacterial infection and amylopectinosis Glycogen storage disease
1 gene
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1 of 1 corroborated by 2+ sources
RBCK1(3)
0.026 0.500 4.80e-3 5.92e-3 ✓ sig. —
Autoinflammatory syndrome Candle syndrome
1 gene
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PSMB8(1)
0.026 0.500 4.80e-3 5.92e-3 ✓ sig. —
Spinal muscular atrophy Testis atrophy
1 gene
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1 of 1 corroborated by 2+ sources
PLEKHG5(2)
0.026 0.500 4.80e-3 5.92e-3 ✓ sig. —
Microscopic colitis Toxic epidermal necrolysis
1 gene
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MICB(1)
0.026 0.500 4.80e-3 5.92e-3 ✓ sig. —
Cone-rod dystrophy MERTK-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
MERTK(2)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Cone-rod dystrophy optic atrophy 13 with retinal and foveal abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
SSBP1(2)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Creatine transporter deficiency X-linked intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A8(3)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Early-onset parkinsonism-intellectual disability syndrome X-linked intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
RAB39B(5)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Early-onset progressive neurodegeneration-blindness-ataxia-spasticity syndrome Esophageal neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
UCHL1(4)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Cone-rod dystrophy enhanced s-cone syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NR2E3(2)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Female restricted epilepsy with intellectual disability X-linked intellectual disability
1 gene
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PCDH19(1)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Cone-rod dystrophy Goldmann-favre syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NR2E3(3)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
renpenning syndrome X-linked intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
PQBP1(5)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. —
Cone-rod dystrophy retinitis pigmentosa 65
1 gene
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1 of 1 corroborated by 2+ sources
CDHR1(8)
0.013 1.000 4.81e-3 5.92e-3 ✓ sig. Cluster 7 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.