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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Generalized epilepsy Glutaminase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GLS(4)
0.015 1.000 4.22e-3 5.32e-3 ✓ sig. —
Auditory system disease Trigeminal nerve disease
1 gene
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DCHS2(1)
0.059 0.167 4.28e-3 5.38e-3 ✓ sig. —
Congenital muscular dystrophy Marinesco-sjogren syndrome
1 gene
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1 of 1 corroborated by 2+ sources
INPP5K(4)
0.040 0.333 4.28e-3 5.38e-3 ✓ sig. —
Bladder disease Gastritis
1 gene
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ZNF385B(1)
0.040 0.333 4.28e-3 5.38e-3 ✓ sig. —
Conjunctival disease Transitional cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
DAPK1(2)
0.029 0.500 4.28e-3 5.38e-3 ✓ sig. —
17q24.2 microdeletion syndrome Sarcoma
1 gene
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1 of 1 corroborated by 2+ sources
BPTF(3)
0.029 0.500 4.28e-3 5.38e-3 ✓ sig. —
Congenital cerebellar ataxia Temporal lobe epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
GRM1(3)
0.029 0.500 4.28e-3 5.38e-3 ✓ sig. —
Lymphatic system disease Temporal lobe epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
SLC12A2(3)
0.029 0.500 4.28e-3 5.38e-3 ✓ sig. —
Bronchitis Male infertility acephalic spermatozoa
1 gene
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1 of 1 corroborated by 2+ sources
PMFBP1(2)
0.029 0.500 4.28e-3 5.38e-3 ✓ sig. —
Intestinal hypomagnesemia Rod-cone dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
TRPM6(3)
0.029 0.500 4.28e-3 5.38e-3 ✓ sig. —
Osteochondrodysplasias Smith-mccort dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
DYM(6)
0.029 0.500 4.28e-3 5.38e-3 ✓ sig. —
Interstitial lung disease Respiratory distress with surfactant metabolism deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SFTPC(5)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
Retinitis pigmentosa with or without skeletal anomalies Urinary bladder cancer
1 gene
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1 of 1 corroborated by 2+ sources
CWC27(2)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
Interstitial lung disease SFTPC-related interstitial lung disease
1 gene
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1 of 1 corroborated by 2+ sources
SFTPC(5)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
Alpha-methylacyl-coa racemase deficiency Hereditary motor and sensory neuropathies
1 gene
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1 of 1 corroborated by 2+ sources
AMACR(3)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
Antecubital pterygium syndrome Urinary bladder cancer
1 gene
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1 of 1 corroborated by 2+ sources
PSD3(3)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
Brachial plexus neuritis Hereditary motor and sensory neuropathies
1 gene
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1 of 1 corroborated by 2+ sources
SEPTIN9(2)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
Brachydactyly-short stature-retinits pigmentosa syndrome Urinary bladder cancer
1 gene
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1 of 1 corroborated by 2+ sources
CWC27(3)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
Brain calcification Interstitial lung disease
1 gene
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1 of 1 corroborated by 2+ sources
FARSB(2)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
Breast/nipple aplasia or hypoplasia Left ventricular disease
1 gene
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1 of 1 corroborated by 2+ sources
PTPRF(5)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
cardiomyopathy, dilated, 2e Left ventricular disease
1 gene
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1 of 1 corroborated by 2+ sources
JPH2(2)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. Cluster 4 →
Barth syndrome Left ventricular disease
1 gene
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1 of 1 corroborated by 2+ sources
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. Cluster 4 →
Cavitary optic disc anomalies Interstitial lung disease
1 gene
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1 of 1 corroborated by 2+ sources
MMP19(3)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
Charcot-Marie-Tooth disease axonal type 2CC Hereditary motor and sensory neuropathies
1 gene
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1 of 1 corroborated by 2+ sources
NEFH(2)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
Charcot-Marie-Tooth disease axonal type 2P Hereditary motor and sensory neuropathies
1 gene
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1 of 1 corroborated by 2+ sources
LRSAM1(2)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. Cluster 15 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.