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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Congenital total cataract Trichohepatoenteric syndrome
1 gene
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AGK(1)
0.050 0.250 4.15e-3 5.23e-3 ✓ sig. —
Male reproductive system disease Pulmonary edema
1 gene
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MYRIP(1)
0.050 0.250 4.15e-3 5.23e-3 ✓ sig. —
Breast fibrocystic disease Coronary aneurysm
1 gene
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CSMD1(1)
0.029 0.500 4.15e-3 5.23e-3 ✓ sig. —
Carbohydrate deficient glycoprotein syndrome Coronary aneurysm
1 gene
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1 of 1 corroborated by 2+ sources
MAN1B1(2)
0.029 0.500 4.15e-3 5.23e-3 ✓ sig. —
Congenital nervous system disorder Esophageal atresia
1 gene
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1 of 1 corroborated by 2+ sources
DROSHA(2)
0.029 0.500 4.15e-3 5.23e-3 ✓ sig. —
Childhood kidney wilms tumor Wilms tumor
1 gene
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1 of 1 corroborated by 2+ sources
TRIM28(2)
0.029 0.500 4.15e-3 5.23e-3 ✓ sig. —
Gastrointestinal disease Intellectual developmental disorder autism dysmorphic
1 gene
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1 of 1 corroborated by 2+ sources
CHD8(5)
0.029 0.500 4.15e-3 5.23e-3 ✓ sig. —
Ectodermal dysplasia X-linked hypohidrotic ectodermal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
EDA(4)
0.029 0.500 4.15e-3 5.23e-3 ✓ sig. Cluster 117 →
Esophageal atresia Rib fracture
1 gene
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1 of 1 corroborated by 2+ sources
TENM2(2)
0.029 0.500 4.15e-3 5.23e-3 ✓ sig. —
Congenital epithelial dysplasia of intestine Hereditary breast cancer
1 gene
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1 of 1 corroborated by 2+ sources
EPCAM(2)
0.029 0.500 4.15e-3 5.23e-3 ✓ sig. —
Kawasaki disease Opitz g/bbb syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SPECC1L(2)
0.015 1.000 4.16e-3 5.24e-3 ✓ sig. —
Hyperuricemia Osteomalacia
1 gene
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1 of 1 corroborated by 2+ sources
MEPE(3)
0.015 1.000 4.16e-3 5.24e-3 ✓ sig. Cluster 178 →
Dalmatian hypouricemia Hyperuricemia
1 gene
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1 of 1 corroborated by 2+ sources
0.015 1.000 4.16e-3 5.24e-3 ✓ sig. Cluster 178 →
Hyperuricemia lesch-nyhan syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HPRT1(4)
0.015 1.000 4.16e-3 5.24e-3 ✓ sig. —
Hyperuricemia renal dysplasia, cystic, susceptibility to
1 gene
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1 of 1 corroborated by 2+ sources
BICC1(2)
0.015 1.000 4.16e-3 5.24e-3 ✓ sig. —
Kawasaki disease thrombocytopenia 10
1 gene
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1 of 1 corroborated by 2+ sources
PTPRJ(2)
0.015 1.000 4.16e-3 5.24e-3 ✓ sig. —
Kawasaki disease Vici syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EPG5(5)
0.015 1.000 4.16e-3 5.24e-3 ✓ sig. —
Hyperuricemia Partial hypoxanthine-guanine phosphoribosyltransferase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
HPRT1(4)
0.015 1.000 4.16e-3 5.24e-3 ✓ sig. —
Byzanthine arch palate Malocclusion
1 gene
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PTK2(1)
0.056 0.200 4.21e-3 5.31e-3 ✓ sig. —
Generalized epilepsy hermansky-pudlak syndrome 4
1 gene
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1 of 1 corroborated by 2+ sources
HPS4(2)
0.015 1.000 4.22e-3 5.32e-3 ✓ sig. —
neurodevelopmental disorder with language impairment and behavioral abnormalities Rhinitis
1 gene
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1 of 1 corroborated by 2+ sources
GRIA2(3)
0.015 1.000 4.22e-3 5.32e-3 ✓ sig. —
Casgid syndrome Generalized epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
GLS(2)
0.015 1.000 4.22e-3 5.32e-3 ✓ sig. —
Generalized epilepsy infantile cataract, skin abnormalities, glutamate excess, and impaired intellectual development
1 gene
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1 of 1 corroborated by 2+ sources
GLS(2)
0.015 1.000 4.22e-3 5.32e-3 ✓ sig. —
Axonal neuropathy Generalized epilepsy
1 gene
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GBF1(1)
0.015 1.000 4.22e-3 5.32e-3 ✓ sig. —
exostoses, multiple, type 1 Generalized epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
EXT1(2)
0.015 1.000 4.22e-3 5.32e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.