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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Frontotemporal dementia hereditary spastic paraplegia 8
1 gene
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1 of 1 corroborated by 2+ sources
WASHC5(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Aortic stenosis HMGB1-related brachyphalangy, polydactyly and tibial aplasia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HMGB1(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
B-cell acute lymphoblastic leukemia hyper-ige syndrome 6, autosomal dominant, with recurrent infections
1 gene
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1 of 1 corroborated by 2+ sources
STAT6(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
hypercholesterolemia, familial, 4 Oropharyngeal cancer
1 gene
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1 of 1 corroborated by 2+ sources
LDLRAP1(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Cerebrofaciothoracic dysplasia Oropharyngeal cancer
1 gene
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1 of 1 corroborated by 2+ sources
TMCO1(3)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
ciliary dyskinesia, primary, 54 Frontotemporal dementia
1 gene
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1 of 1 corroborated by 2+ sources
CFAP54(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. Cluster 102 →
Cleft palate Cleft palate with ankyloglossia
1 gene
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1 of 1 corroborated by 2+ sources
TBX22(5)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Cleft palate Cleft palate x-linked
1 gene
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1 of 1 corroborated by 2+ sources
TBX22(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Codas syndrome Congenital cataract
1 gene
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1 of 1 corroborated by 2+ sources
LONP1(6)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Aortic stenosis Uterine benign neoplasm
1 gene
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BET1L(1)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Cleft palate X-linked cleft palate and ankloglossia
1 gene
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1 of 1 corroborated by 2+ sources
TBX22(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Frontotemporal dementia leukoencephalopathy, diffuse hereditary, with spheroids 1
1 gene
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1 of 1 corroborated by 2+ sources
CSF1R(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
lysinuric protein intolerance Oropharyngeal cancer
1 gene
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1 of 1 corroborated by 2+ sources
SLC7A7(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Mucosa-associated lymphoma Testicular germ cell tumor
1 gene
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1 of 1 corroborated by 2+ sources
BCL10(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Cleft palate renal hypomagnesemia 4
1 gene
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1 of 1 corroborated by 2+ sources
EGF(3)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Aortic stenosis Short stature spectrum
1 gene
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1 of 1 corroborated by 2+ sources
ACAN(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Congenital cataract nance-horan syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NHS(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. Cluster 43 →
Congenital cataract Oculocerebrorenal syndrome
1 gene
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1 of 1 corroborated by 2+ sources
OCRL(5)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
immunodeficiency 37 Testicular germ cell tumor
1 gene
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1 of 1 corroborated by 2+ sources
BCL10(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Frontotemporal dementia inclusion body myopathy with early-onset paget disease with or without frontotemporal dementia 2
1 gene
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1 of 1 corroborated by 2+ sources
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
B-cell acute lymphoblastic leukemia infantile cataract, skin abnormalities, glutamate excess, and impaired intellectual development
1 gene
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1 of 1 corroborated by 2+ sources
GLS(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Aortic stenosis intellectual developmental disorder, autosomal recessive 75, with neuropsychiatric features and variant lissencephaly
1 gene
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1 of 1 corroborated by 2+ sources
PIDD1(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
B-cell acute lymphoblastic leukemia Intracranial germ cell tumor
1 gene
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BAK1(1)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Intracranial germ cell tumor Testicular carcinoma
1 gene
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BAK1(1)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
khan-khan-katsanis syndrome Testicular carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
NCAPG2(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.