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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Aplasia of the vermis Ziegler-huang syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLC30A7(2)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. —
intellectual developmental disorder 59 Psoriasis vulgaris
1 gene
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1 of 1 corroborated by 2+ sources
CAMK2G(2)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. Cluster 162 →
Cognition disorder Intracranial hypertension
1 gene
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SLC4A10(1)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. —
Aplasia of the vermis joubert syndrome 21
1 gene
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1 of 1 corroborated by 2+ sources
CSPP1(2)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. Cluster 8 →
Aplasia of the vermis joubert syndrome 24
1 gene
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1 of 1 corroborated by 2+ sources
TCTN2(2)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. Cluster 8 →
Aplasia of the vermis joubert syndrome 30
1 gene
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1 of 1 corroborated by 2+ sources
ARMC9(2)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. Cluster 8 →
Distal myotilinopathy Non-neoplastic peripheral nervous system disease
1 gene
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1 of 1 corroborated by 2+ sources
MYOT(2)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. —
Early-onset progressive neurodegeneration-blindness-ataxia-spasticity syndrome Non-neoplastic peripheral nervous system disease
1 gene
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1 of 1 corroborated by 2+ sources
UCHL1(3)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. —
Lymphoblastic leukemia Mixed connective tissue disease
2 genes
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MYRIP(1), KCNMB2(1)
0.025 0.083 3.53e-3 4.54e-3 ✓ sig. —
Cutaneous lupus erythematosus Malocclusion
1 gene
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1 of 1 corroborated by 2+ sources
CSNK2B(2)
0.063 0.200 3.57e-3 4.59e-3 ✓ sig. —
Central precocious puberty Kleins syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PAX3(2)
0.063 0.200 3.57e-3 4.59e-3 ✓ sig. Cluster 229 →
Aneuploidy Mosaic variegated aneuploidy
1 gene
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1 of 1 corroborated by 2+ sources
TRIP13(5)
0.063 0.200 3.57e-3 4.59e-3 ✓ sig. —
Dyshidrosis Periodic limb movement disorder
1 gene
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PTPRD(1)
0.063 0.200 3.57e-3 4.59e-3 ✓ sig. —
Dyshidrosis Sarcopenia
1 gene
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PTPRD(1)
0.063 0.200 3.57e-3 4.59e-3 ✓ sig. —
Arthrogryposis Uv-sensitive syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ERCC6(6)
0.063 0.200 3.57e-3 4.59e-3 ✓ sig. —
Hemolytic anemia Triose phosphate isomerase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
TPI1(6)
0.018 1.000 3.57e-3 4.59e-3 ✓ sig. —
Hemolytic anemia Uridine monophosphate hydrolase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
NT5C3A(5)
0.018 1.000 3.57e-3 4.59e-3 ✓ sig. —
Necrosis Verheij syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PUF60(2)
0.018 1.000 3.57e-3 4.59e-3 ✓ sig. —
Charcot-Marie-Tooth disease type 4B2 Hemolytic anemia
1 gene
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1 of 1 corroborated by 2+ sources
SBF2(2)
0.018 1.000 3.57e-3 4.59e-3 ✓ sig. Cluster 105 →
macrothrombocytopenia-lymphedema-developmental delay-facial dysmorphism-camptodactyly syndrome Necrosis
1 gene
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1 of 1 corroborated by 2+ sources
CDC42(2)
0.018 1.000 3.57e-3 4.59e-3 ✓ sig. Cluster 114 →
Hemolytic anemia Rh-null, amorph type
1 gene
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1 of 1 corroborated by 2+ sources
RHCE(3)
0.018 1.000 3.57e-3 4.59e-3 ✓ sig. —
Hemolytic anemia Rh-null, regulator type
1 gene
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1 of 1 corroborated by 2+ sources
RHAG(3)
0.018 1.000 3.57e-3 4.59e-3 ✓ sig. —
Carotid artery disease Rh-null, regulator type
1 gene
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1 of 1 corroborated by 2+ sources
RHAG(4)
0.018 1.000 3.57e-3 4.59e-3 ✓ sig. —
Necrosis spinocerebellar ataxia, autosomal recessive 25
1 gene
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1 of 1 corroborated by 2+ sources
ATG5(2)
0.018 1.000 3.57e-3 4.59e-3 ✓ sig. —
Necrosis spinocerebellar ataxia, autosomal recessive 31
1 gene
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1 of 1 corroborated by 2+ sources
ATG7(2)
0.018 1.000 3.57e-3 4.59e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.