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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Acrokeratosis verruciformis Ventricular dysfunction
1 gene
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1 of 1 corroborated by 2+ sources
ATP2A2(2)
0.021 1.000 2.99e-3 3.95e-3 ✓ sig. —
Amr syndrome Calcinosis
1 gene
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AHSG(1)
0.021 1.000 2.99e-3 3.95e-3 ✓ sig. —
anterior segment dysgenesis 8 Retinal detachment
1 gene
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1 of 1 corroborated by 2+ sources
CPAMD8(2)
0.021 1.000 2.99e-3 3.95e-3 ✓ sig. —
Apolipoprotein a-ii amyloidosis Hypercholesterolemia
1 gene
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1 of 1 corroborated by 2+ sources
APOA2(4)
0.021 1.000 2.99e-3 3.95e-3 ✓ sig. —
Apolipoprotein a-ii deficiency Hypercholesterolemia
1 gene
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1 of 1 corroborated by 2+ sources
APOA2(3)
0.021 1.000 2.99e-3 3.95e-3 ✓ sig. —
Apolipoprotein c-iii deficiency Hypercholesterolemia
1 gene
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1 of 1 corroborated by 2+ sources
APOC3(4)
0.021 1.000 2.99e-3 3.95e-3 ✓ sig. —
primary ciliary dyskinesia 23 Retinal detachment
1 gene
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1 of 1 corroborated by 2+ sources
ODAD2(2)
0.021 1.000 2.99e-3 3.95e-3 ✓ sig. —
pseudohyperaldosteronism type 2 Ventricular dysfunction
1 gene
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1 of 1 corroborated by 2+ sources
NR3C2(2)
0.021 1.000 2.99e-3 3.95e-3 ✓ sig. —
Pseudohypoaldosteronism Ventricular dysfunction
1 gene
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1 of 1 corroborated by 2+ sources
NR3C2(4)
0.021 1.000 2.99e-3 3.95e-3 ✓ sig. —
Cerebral palsy pseudohypoaldosteronism type 2D
1 gene
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1 of 1 corroborated by 2+ sources
KLHL3(2)
0.021 1.000 2.99e-3 3.95e-3 ✓ sig. —
Immune system disease pulmonary veno-occlusive disease and/or pulmonary capillary haemangiomatosis
1 gene
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1 of 1 corroborated by 2+ sources
EIF2AK4(2)
0.021 1.000 2.99e-3 3.95e-3 ✓ sig. —
RDH5-related retinopathy Retinal detachment
1 gene
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1 of 1 corroborated by 2+ sources
RDH5(2)
0.021 1.000 2.99e-3 3.95e-3 ✓ sig. —
Chromosome 5q deletion syndrome Myelodysplastic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RPS14(4)
0.021 1.000 2.99e-3 3.95e-3 ✓ sig. —
Chromosome xq25 duplication syndrome Myelodysplastic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
STAG2(2)
0.021 1.000 2.99e-3 3.95e-3 ✓ sig. —
Immune system disease TRPM1-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
TRPM1(2)
0.021 1.000 2.99e-3 3.95e-3 ✓ sig. —
Myelodysplastic syndrome Upper extremity deformity, congenital
1 gene
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1 of 1 corroborated by 2+ sources
EZH2(2)
0.021 1.000 2.99e-3 3.95e-3 ✓ sig. —
Cerebral palsy Ventriculomegaly with arthrogryposis
1 gene
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1 of 1 corroborated by 2+ sources
0.021 1.000 2.99e-3 3.95e-3 ✓ sig. —
Calcinosis Vitamin k deficiency
1 gene
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1 of 1 corroborated by 2+ sources
BGLAP(2)
0.021 1.000 2.99e-3 3.95e-3 ✓ sig. Cluster 370 →
Myelodysplastic syndrome Xq25 microduplication syndrome
1 gene
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1 of 1 corroborated by 2+ sources
STAG2(4)
0.021 1.000 2.99e-3 3.95e-3 ✓ sig. —
Retinal detachment Yuksel-vogel-bauer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DLG5(4)
0.021 1.000 2.99e-3 3.95e-3 ✓ sig. —
combined immunodeficiency due to STIM1 deficiency Urticaria
1 gene
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1 of 1 corroborated by 2+ sources
STIM1(2)
0.021 1.000 2.99e-3 3.95e-3 ✓ sig. —
Congenital alveolar capillary dysplasia Gastrointestinal stromal tumor
1 gene
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1 of 1 corroborated by 2+ sources
FOXF1(2)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
Congenital insufficiency of mitral valve Mitral valve prolapse
1 gene
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1 of 1 corroborated by 2+ sources
LMCD1(3)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
Dihydropyrimidine dehydrogenase deficiency Head and neck neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
DPYD(6)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
Duplication of pituitary gland Gastrointestinal stromal tumor
1 gene
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1 of 1 corroborated by 2+ sources
PTCH2(2)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.