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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Salivary gland neoplasms Zhu-tokita-takenouchi-kim syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SON(6)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Combined immunodeficiency disease HELIOS deficiency
1 gene
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1 of 1 corroborated by 2+ sources
IKZF2(2)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Combined immunodeficiency disease hyper-IgE recurrent infection syndrome 5, autosomal recessive
1 gene
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1 of 1 corroborated by 2+ sources
IL6R(3)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Diffuse gastric and lobular breast cancer syndrome Macular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
CTNNA1(4)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Combined immunodeficiency disease Dock2 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
DOCK2(5)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Ehlers-danlos syndrome ehlers-danlos syndrome, musculocontractural type 1
1 gene
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1 of 1 corroborated by 2+ sources
CHST14(6)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Ehlers-danlos syndrome ehlers-danlos syndrome, musculocontractural type 2
1 gene
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1 of 1 corroborated by 2+ sources
DSE(5)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. Cluster 12 →
Ehlers-danlos syndrome Ehlers-Danlos syndrome, spondylocheirodysplastic type
1 gene
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1 of 1 corroborated by 2+ sources
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Ehlers-danlos syndrome ehlers-danlos syndrome, spondylodysplastic type, 1
1 gene
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1 of 1 corroborated by 2+ sources
B4GALT7(6)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Combined immunodeficiency disease immunodeficiency 15a
1 gene
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1 of 1 corroborated by 2+ sources
IKBKB(2)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Combined immunodeficiency disease immunodeficiency 53
1 gene
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1 of 1 corroborated by 2+ sources
RELB(2)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. Cluster 10 →
Combined immunodeficiency disease immunodeficiency 76
1 gene
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1 of 1 corroborated by 2+ sources
FCHO1(3)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Combined immunodeficiency disease immunodeficiency 92
1 gene
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1 of 1 corroborated by 2+ sources
REL(2)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
IMPG1-related dominant retinopathy Macular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
IMPG1(4)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
IMPG1-related recessive retinopathy Macular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
IMPG1(4)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
IMPG2-related recessive retinopathy Macular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
IMPG2(3)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Combined immunodeficiency disease Intellectual developmental disorder dysmorphic skeletal hair
1 gene
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1 of 1 corroborated by 2+ sources
BCL11B(2)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Intellectual developmental disorder microcephaly ocular Salivary gland neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
SOX11(4)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Combined immunodeficiency disease Intellectual developmental disorder speech dysmorphic t-cell
1 gene
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1 of 1 corroborated by 2+ sources
BCL11B(5)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Combined immunodeficiency disease Interleukin 6 quantitative trait
1 gene
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1 of 1 corroborated by 2+ sources
IL6R(4)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Atrial myxoma Usher syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PRKAR1A(4)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
autosomal dominant combined immunodeficiency due to ERBIN deficiency Combined immunodeficiency disease
1 gene
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1 of 1 corroborated by 2+ sources
ERBIN(4)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. Cluster 10 →
Axonal neuropathy Partial epilepsy
1 gene
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GBF1(1)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
B3GALT6-congenital disorder of glycosylation Ehlers-danlos syndrome
1 gene
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1 of 1 corroborated by 2+ sources
B3GALT6(5)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
BBS1-related ciliopathy Usher syndrome
1 gene
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1 of 1 corroborated by 2+ sources
BBS1(2)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.