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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Keratitis Thyroid hormone resistance
1 gene
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1 of 1 corroborated by 2+ sources
TRHR(3)
0.042 0.500 2.86e-3 3.81e-3 ✓ sig. —
Severe congenital neutropenia Whim syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CXCR2(6)
0.042 0.500 2.86e-3 3.81e-3 ✓ sig. —
Severe congenital neutropenia Wiskott-aldrich syndrome
1 gene
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1 of 1 corroborated by 2+ sources
WAS(7)
0.042 0.500 2.86e-3 3.81e-3 ✓ sig. —
Centronuclear myopathy X-linked myotubular myopathy
1 gene
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1 of 1 corroborated by 2+ sources
MTM1(4)
0.042 0.500 2.86e-3 3.81e-3 ✓ sig. —
Sialolithiasis Soft tissue neoplasms
1 gene
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EPHB1(1)
0.042 0.500 2.86e-3 3.81e-3 ✓ sig. —
Severe congenital neutropenia Specific granule deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SMARCD2(5)
0.042 0.500 2.86e-3 3.81e-3 ✓ sig. —
Sweat gland disease Synovitis, acne, pustulosis, hyperostosis, and osteitis
1 gene
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TCERG1L(1)
0.042 0.500 2.86e-3 3.81e-3 ✓ sig. —
Erythematosquamous dermatosis Primary cutaneous anaplastic large cell lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
TYK2(2)
0.042 0.500 2.86e-3 3.81e-3 ✓ sig. —
Factor viii deficiency Venous thrombosis
1 gene
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1 of 1 corroborated by 2+ sources
F8(2)
0.042 0.500 2.86e-3 3.81e-3 ✓ sig. —
Dysarthria Ophthalmoplegia
1 gene
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1 of 1 corroborated by 2+ sources
NPC1(2)
0.042 0.500 2.86e-3 3.81e-3 ✓ sig. —
Congenital bilateral absence of vas deferens Sinusitis
1 gene
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1 of 1 corroborated by 2+ sources
CFTR(5)
0.042 0.500 2.86e-3 3.81e-3 ✓ sig. —
Cerebral arteriovenous malformations Congenital cerebral aneurysm
1 gene
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PDCD10(1)
0.042 0.500 2.86e-3 3.81e-3 ✓ sig. —
Cerebral arteriovenous malformations Congenital malformation of cerebral vessels
1 gene
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PDCD10(1)
0.042 0.500 2.86e-3 3.81e-3 ✓ sig. —
Congenital nervous system disorder Febrile convulsion
1 gene
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1 of 1 corroborated by 2+ sources
UNC13A(3)
0.042 0.500 2.86e-3 3.81e-3 ✓ sig. —
Cranio-cervical dystonia Dystonia
1 gene
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1 of 1 corroborated by 2+ sources
ANO3(6)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Deafness dystonia syndrome Dystonia
1 gene
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1 of 1 corroborated by 2+ sources
TIMM8A(3)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Combined immunodeficiency disease TFRC-related combined immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
TFRC(3)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Macular dystrophy TOPORS-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
TOPORS(2)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Macular dystrophy TTC8-related ciliopathy
1 gene
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1 of 1 corroborated by 2+ sources
TTC8(2)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Usher syndrome Usher syndrome type 2D
1 gene
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1 of 1 corroborated by 2+ sources
WHRN(6)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Usher syndrome Usher syndrome type 3
1 gene
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1 of 1 corroborated by 2+ sources
CLRN1(7)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Dystonia VPS11-related neurological disorder
1 gene
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1 of 1 corroborated by 2+ sources
VPS11(4)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Usher syndrome X-linked dominant chondrodysplasia chassaing-lacombe type
1 gene
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1 of 1 corroborated by 2+ sources
HDAC6(4)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —
Dystonia X-linked dystonia-parkinsonism
1 gene
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1 of 1 corroborated by 2+ sources
TAF1(6)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. Cluster 167 →
Macular dystrophy X-linked retinitis pigmentosa
1 gene
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RP2(1)
0.022 1.000 2.86e-3 3.81e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.