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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Apolipoprotein c-ii deficiency Hyperlipoproteinemia
1 gene
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1 of 1 corroborated by 2+ sources
APOC2(6)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. Cluster 141 →
Apolipoprotein c-iii deficiency Hyperlipoproteinemia
1 gene
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1 of 1 corroborated by 2+ sources
APOC3(4)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
immunodeficiency 109 with lymphoproliferation Kidney neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
TNFRSF9(2)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. Cluster 5 →
Intellectual developmental disorder seizures behavioral Myasthenic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ALG14(4)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. Cluster 34 →
INTU-related skeletal ciliopathy Nephronophthisis
1 gene
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1 of 1 corroborated by 2+ sources
INTU(2)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
kidney disorder Nephronophthisis
1 gene
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1 of 1 corroborated by 2+ sources
SLC41A1(2)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
Generalized anxiety disorder leukodystrophy, hypomyelinating, 16
1 gene
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1 of 1 corroborated by 2+ sources
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
MKKS-related ciliopathy Nephronophthisis
1 gene
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1 of 1 corroborated by 2+ sources
MKKS(2)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. Cluster 8 →
Developmental delay with hypotonia, myopathy, and brain abnormalities Neuromuscular disease
1 gene
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1 of 1 corroborated by 2+ sources
GOLGA2(3)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. Cluster 189 →
Diffuse gastric and lobular breast cancer syndrome Generalized anxiety disorder
1 gene
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1 of 1 corroborated by 2+ sources
CTNNA1(2)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
DPAGT1-congenital disorder of glycosylation Myasthenic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DPAGT1(4)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
Hecht syndrome Neuromuscular disease
1 gene
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1 of 1 corroborated by 2+ sources
MYH8(3)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
Hepatic lipase deficiency Hyperlipoproteinemia
1 gene
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1 of 1 corroborated by 2+ sources
LIPC(3)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
hypercholesterolemia, autosomal dominant, 3 Hyperlipoproteinemia
1 gene
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1 of 1 corroborated by 2+ sources
PCSK9(2)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
hypercholesterolemia, familial, 1 Hyperlipoproteinemia
1 gene
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1 of 1 corroborated by 2+ sources
LDLR(3)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
hypercholesterolemia, familial, 4 Hyperlipoproteinemia
1 gene
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1 of 1 corroborated by 2+ sources
LDLRAP1(3)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. Cluster 141 →
Hypo-akinesia disorder of prenatal onset Myasthenic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CHRNG(4)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
Degenerative disorder Pantothenate kinase-associated neurodegeneration
1 gene
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1 of 1 corroborated by 2+ sources
PANK2(4)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
Colonic disease Hyperlipoproteinemia
1 gene
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GHR(1)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
Nephronophthisis nephronophthisis 1
1 gene
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1 of 1 corroborated by 2+ sources
NPHP1(6)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. Cluster 8 →
Nephronophthisis nephronophthisis 12
1 gene
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1 of 1 corroborated by 2+ sources
TTC21B(5)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
Nephronophthisis nephronophthisis 16
1 gene
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1 of 1 corroborated by 2+ sources
ANKS6(7)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
Nephronophthisis nephronophthisis 2
1 gene
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1 of 1 corroborated by 2+ sources
INVS(6)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. Cluster 8 →
Nephronophthisis nephronophthisis 20
1 gene
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1 of 1 corroborated by 2+ sources
MAPKBP1(6)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. Cluster 8 →
Nephronophthisis nephronophthisis 4
1 gene
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1 of 1 corroborated by 2+ sources
NPHP4(7)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. Cluster 8 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.