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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Congenital cataract hypertrophic cardiomyopathy mitochondrial myopathy syndrome Progressive external ophthalmoplegia
1 gene
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1 of 1 corroborated by 2+ sources
SLC25A4(3)
0.063 0.333 2.53e-3 3.45e-3 ✓ sig. —
Congenital respiratory system anomaly Thyroid gland neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
PDGFRA(2)
0.063 0.333 2.53e-3 3.45e-3 ✓ sig. —
Raynaud disease Urethral disease
1 gene
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ZFHX3(1)
0.063 0.333 2.53e-3 3.45e-3 ✓ sig. —
Polydactyly TTC8-related ciliopathy
1 gene
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1 of 1 corroborated by 2+ sources
TTC8(2)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. —
Fanconi anemia Vacterl-hydrocephalus syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FANCB(7)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. —
Osteogenesis imperfecta X-linked osteoporosis
1 gene
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1 of 1 corroborated by 2+ sources
PLS3(3)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. —
leukoencephalopathy with vanishing white matter 2 Osteogenesis imperfecta
1 gene
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1 of 1 corroborated by 2+ sources
EIF2B2(2)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. —
megalencephaly-polymicrogyria-polydactyly-hydrocephalus syndrome 3 Polydactyly
1 gene
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1 of 1 corroborated by 2+ sources
CCND2(3)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. —
MEGF8-related Carpenter syndrome Polydactyly
1 gene
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1 of 1 corroborated by 2+ sources
MEGF8(2)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. —
Metaphyseal chondrodysplasia with retinitis pigmentosa Osteonecrosis
1 gene
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1 of 1 corroborated by 2+ sources
CWC27(5)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. Cluster 373 →
familial ovarian cancer Fanconi anemia
1 gene
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1 of 1 corroborated by 2+ sources
BRIP1(7)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. —
Fanconi anemia Fanconi anemia complementation group A
1 gene
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1 of 1 corroborated by 2+ sources
FANCA(7)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. —
Fanconi anemia fanconi anemia complementation group b
1 gene
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1 of 1 corroborated by 2+ sources
FANCB(7)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. —
Fanconi anemia Fanconi anemia complementation group C
1 gene
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1 of 1 corroborated by 2+ sources
FANCC(8)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. —
Fanconi anemia fanconi anemia complementation group d2
1 gene
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1 of 1 corroborated by 2+ sources
FANCD2(7)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. —
Fanconi anemia fanconi anemia complementation group e
1 gene
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1 of 1 corroborated by 2+ sources
FANCE(7)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. —
Fanconi anemia fanconi anemia complementation group f
1 gene
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1 of 1 corroborated by 2+ sources
FANCF(7)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. Cluster 132 →
Fanconi anemia fanconi anemia complementation group g
1 gene
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1 of 1 corroborated by 2+ sources
FANCG(6)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. —
Fanconi anemia fanconi anemia complementation group i
1 gene
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1 of 1 corroborated by 2+ sources
FANCI(6)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. —
Fanconi anemia fanconi anemia complementation group j
1 gene
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1 of 1 corroborated by 2+ sources
BRIP1(7)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. —
Fanconi anemia fanconi anemia complementation group l
1 gene
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1 of 1 corroborated by 2+ sources
FANCL(7)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. —
Fanconi anemia fanconi anemia complementation group o
1 gene
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1 of 1 corroborated by 2+ sources
RAD51C(7)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. —
Fanconi anemia fanconi anemia complementation group p
1 gene
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1 of 1 corroborated by 2+ sources
SLX4(8)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. Cluster 132 →
Fanconi anemia Fanconi anemia complementation group U
1 gene
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1 of 1 corroborated by 2+ sources
XRCC2(7)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. Cluster 132 →
Frontonasal dysplasia with alopecia and genital anomaly Polydactyly
1 gene
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1 of 1 corroborated by 2+ sources
ALX4(6)
0.025 1.000 2.53e-3 3.45e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.