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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Ovarian cysts platelet-type bleeding disorder 12
1 gene
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1 of 1 corroborated by 2+ sources
PTGS1(2)
0.028 1.000 2.27e-3 3.19e-3 ✓ sig. —
Congenital bile acid synthesis defect Hereditary sensory and motor neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
AMACR(6)
0.083 0.167 2.34e-3 3.24e-3 ✓ sig. —
Cleft lip with or without cleft palate Trigeminal nerve disease
1 gene
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1 of 1 corroborated by 2+ sources
CTNND1(2)
0.083 0.167 2.34e-3 3.24e-3 ✓ sig. Cluster 312 →
Vertebral, cardiac, renal, and limb defects syndrome Vitamin deficiency disorder
1 gene
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1 of 1 corroborated by 2+ sources
NADSYN1(5)
0.077 0.250 2.34e-3 3.24e-3 ✓ sig. —
primary ciliary dyskinesia Visceral heterotaxy
1 gene
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1 of 1 corroborated by 2+ sources
DAW1(2)
0.077 0.250 2.34e-3 3.24e-3 ✓ sig. —
Charge syndrome complex neurodevelopmental disorder with or without congenital anomalies
1 gene
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1 of 1 corroborated by 2+ sources
RERE(2)
0.077 0.250 2.34e-3 3.24e-3 ✓ sig. —
Hyperproinsulinemia Male pseudohypopituitarism
1 gene
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1 of 1 corroborated by 2+ sources
LHB(2)
0.077 0.250 2.34e-3 3.24e-3 ✓ sig. —
Mitochondrial myopathy with sideroblastic anemia Optic neuropathy
1 gene
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ATP6(1)
0.077 0.250 2.34e-3 3.24e-3 ✓ sig. —
Congenital pain insensitivity Corneal ulcer
1 gene
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1 of 1 corroborated by 2+ sources
NGF(2)
0.077 0.250 2.34e-3 3.24e-3 ✓ sig. —
Asperger syndrome Salivary gland disease
1 gene
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NTM(1)
0.077 0.250 2.34e-3 3.24e-3 ✓ sig. —
Anti-glomerular basement membrane disease Irritant dermatitis
1 gene
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1 of 1 corroborated by 2+ sources
0.077 0.250 2.34e-3 3.24e-3 ✓ sig. —
Carcinoid tumor Congenital esophageal anomaly
1 gene
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1 of 1 corroborated by 2+ sources
CDKAL1(2)
0.077 0.250 2.34e-3 3.24e-3 ✓ sig. —
Carcinoid tumor Diabetic polyneuropathy
1 gene
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CDKAL1(1)
0.077 0.250 2.34e-3 3.24e-3 ✓ sig. —
Hyperproinsulinemia Myoclonic dystonia
1 gene
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1 of 1 corroborated by 2+ sources
DRD2(2)
0.077 0.250 2.34e-3 3.24e-3 ✓ sig. Cluster 325 →
Dystonia musculorum deformans Myoclonic dystonia
1 gene
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1 of 1 corroborated by 2+ sources
SGCE(4)
0.077 0.250 2.34e-3 3.24e-3 ✓ sig. —
Developmental coordination disorder Hypotonia-cystinuria syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CAMKMT(2)
0.067 0.333 2.34e-3 3.24e-3 ✓ sig. —
Cholecystitis Sitosterolemia
1 gene
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1 of 1 corroborated by 2+ sources
ABCG8(7)
0.067 0.333 2.34e-3 3.24e-3 ✓ sig. —
Chromosome 22q11.2 microdeletion syndrome Specific learning disability
1 gene
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1 of 1 corroborated by 2+ sources
MAPK1(2)
0.067 0.333 2.34e-3 3.24e-3 ✓ sig. —
Coenzyme q10 deficiency Shy-drager syndrome
1 gene
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1 of 1 corroborated by 2+ sources
COQ2(4)
0.067 0.333 2.34e-3 3.24e-3 ✓ sig. —
Frontotemporal dementia with or without amyotrophic lateral sclerosis Genetic neurodegenerative disease
1 gene
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KIF5A(1)
0.067 0.333 2.34e-3 3.24e-3 ✓ sig. —
Combined deficiency of vitamin k-dependent clotting factors familial thoracic aortic aneurysm and aortic dissection
1 gene
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1 of 1 corroborated by 2+ sources
MAT2A(2)
0.067 0.333 2.34e-3 3.24e-3 ✓ sig. —
Congenital pes cavus Pericardium disorder
1 gene
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1 of 1 corroborated by 2+ sources
PTPRQ(2)
0.067 0.333 2.34e-3 3.24e-3 ✓ sig. —
Hypotrichosis simplex Perniola krajewska carnevale syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LSS(3)
0.067 0.333 2.34e-3 3.24e-3 ✓ sig. —
Thyrotoxic periodic paralysis Urethral disease
1 gene
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ZFHX3(1)
0.067 0.333 2.34e-3 3.24e-3 ✓ sig. —
Bile duct cancer Specific learning disability
1 gene
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1 of 1 corroborated by 2+ sources
MAPK1(2)
0.067 0.333 2.34e-3 3.24e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.