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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Heart defect, tongue hamartoma and polysyndactyly Orofaciodigital syndrome
1 gene
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1 of 1 corroborated by 2+ sources
WDPCP(4)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. Cluster 8 →
Hemophilia a carriers Thrombophilia
1 gene
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1 of 1 corroborated by 2+ sources
F8(5)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. —
Hemophilia b carriers Thrombophilia
1 gene
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1 of 1 corroborated by 2+ sources
F9(7)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. —
hereditary thrombophilia due to congenital histidine-rich (poly-L) glycoprotein deficiency Thrombophilia
1 gene
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1 of 1 corroborated by 2+ sources
HRG(4)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. Cluster 55 →
hyper-IgE recurrent infection syndrome 5, autosomal recessive Polyarticular juvenile idiopathic arthritis
1 gene
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1 of 1 corroborated by 2+ sources
IL6R(2)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. —
12p12.1 microdeletion syndrome Azoospermia
1 gene
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1 of 1 corroborated by 2+ sources
SOX5(3)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. —
Absence of fingerprints-congenital milia syndrome Ectodermal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. Cluster 117 →
amyotrophic lateral sclerosis, susceptibility to, 24 Orofaciodigital syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NEK1(4)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. —
Anhidrotic ectodermal dysplasia Ectodermal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
EDA(3)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. Cluster 117 →
Ectodermal dysplasia familial acute necrotizing encephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
RANBP2(2)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. —
familial ovarian cancer Hereditary breast cancer
1 gene
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1 of 1 corroborated by 2+ sources
BRIP1(2)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. —
Aplastic anemia FANCM Fanconi-like genomic instability disorder
1 gene
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1 of 1 corroborated by 2+ sources
FANCM(2)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. —
Azoospermia FANCM Fanconi-like genomic instability disorder
1 gene
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1 of 1 corroborated by 2+ sources
FANCM(2)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. —
FANCM Fanconi-like genomic instability disorder Hereditary breast cancer
1 gene
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1 of 1 corroborated by 2+ sources
FANCM(2)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. —
fanconi anemia complementation group j Hereditary breast cancer
1 gene
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1 of 1 corroborated by 2+ sources
BRIP1(2)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. —
fanconi anemia complementation group n Hereditary breast cancer
1 gene
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1 of 1 corroborated by 2+ sources
PALB2(3)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. —
fanconi anemia complementation group p Hereditary breast cancer
1 gene
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SLX4(1)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. Cluster 132 →
Fanconi anemia complementation group U Hereditary breast cancer
1 gene
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1 of 1 corroborated by 2+ sources
XRCC2(2)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. Cluster 132 →
Gallbladder agenesis Wilms tumor
1 gene
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1 of 1 corroborated by 2+ sources
MYCN(2)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. —
Corneal dystrophy gapo syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ANTXR1(2)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. —
Aplastic anemia Genetic lipodystrophy
1 gene
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EPHX1(1)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. —
Esophageal atresia Genetic syndromic pierre robin syndrome
1 gene
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EFTUD2(1)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. —
Corneal dystrophy Groenouw corneal dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
TGFBI(4)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. —
Corneal dystrophy Growth retardation, alopecia, pseudoanodontia and optic atrophy
1 gene
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1 of 1 corroborated by 2+ sources
ANTXR1(3)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. —
Chromodomain helicase dna binding protein 8 overgrowth syndrome Gastrointestinal disease
1 gene
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1 of 1 corroborated by 2+ sources
CHD8(2)
0.030 1.000 2.08e-3 2.97e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.