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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Paraganglioma Skeletal muscle disorder
1 gene
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SDHA(1)
0.083 0.250 2.08e-3 2.97e-3 ✓ sig. Cluster 81 →
Congenital hypothyroidism due to absence of thyroid gland Spermatocele
1 gene
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1 of 1 corroborated by 2+ sources
PAX8(2)
0.083 0.250 2.08e-3 2.97e-3 ✓ sig. Cluster 88 →
Congenital fusion of ribs Spondylocostal dysostosis
1 gene
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1 of 1 corroborated by 2+ sources
DLL3(5)
0.083 0.250 2.08e-3 2.97e-3 ✓ sig. —
Dysphoric mood Spondylocostal dysostosis
1 gene
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1 of 1 corroborated by 2+ sources
DLL3(5)
0.083 0.250 2.08e-3 2.97e-3 ✓ sig. —
Connective tissue neoplasm Coronary syndrome
1 gene
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LPL(1)
0.083 0.250 2.08e-3 2.97e-3 ✓ sig. —
B-cell chronic lymphocytic leukemia Bowen’s disease
1 gene
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1 of 1 corroborated by 2+ sources
CCND1(2)
0.083 0.250 2.08e-3 2.97e-3 ✓ sig. —
Congenital fusion of ribs Jarcho-levin syndrome
1 gene
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DLL3(1)
0.083 0.250 2.08e-3 2.97e-3 ✓ sig. —
Dysphoric mood Jarcho-levin syndrome
1 gene
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DLL3(1)
0.083 0.250 2.08e-3 2.97e-3 ✓ sig. —
Intellectual developmental disorder dysmorphic cerebellar Mitochondrial encephalomyopathy
1 gene
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CYTB(1)
0.056 0.500 2.08e-3 2.97e-3 ✓ sig. —
Distal arthrogryposis Intestinal polyposis
1 gene
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1 of 1 corroborated by 2+ sources
STK11(2)
0.056 0.500 2.08e-3 2.97e-3 ✓ sig. —
Cerebrofacioarticular syndrome Lymphedema
1 gene
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1 of 1 corroborated by 2+ sources
DCHS1(2)
0.056 0.500 2.08e-3 2.97e-3 ✓ sig. —
Congenital anomaly of limb Omodysplasia
1 gene
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1 of 1 corroborated by 2+ sources
GPC6(6)
0.056 0.500 2.08e-3 2.97e-3 ✓ sig. —
Factor viii deficiency Hemophilia a
1 gene
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1 of 1 corroborated by 2+ sources
F8(6)
0.056 0.500 2.08e-3 2.97e-3 ✓ sig. —
Fetal erythroblastosis Hemophilia a
1 gene
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FCGR2A(1)
0.056 0.500 2.08e-3 2.97e-3 ✓ sig. Cluster 55 →
Diffuse gastric adenocarcinoma Oculoauricular syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HMX1(7)
0.056 0.500 2.08e-3 2.97e-3 ✓ sig. —
Dopamine beta-hydroxy­lase deficiency Pheochromocytoma
1 gene
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1 of 1 corroborated by 2+ sources
DBH(3)
0.056 0.500 2.08e-3 2.97e-3 ✓ sig. —
Duane-radial ray syndrome Loeys-dietz syndrome
1 gene
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1 of 1 corroborated by 2+ sources
IPO8(2)
0.056 0.500 2.08e-3 2.97e-3 ✓ sig. —
Gliosarcoma Mountain sickness
1 gene
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1 of 1 corroborated by 2+ sources
TACC1(2)
0.056 0.500 2.08e-3 2.97e-3 ✓ sig. —
Sweet syndrome Vacterl association
1 gene
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1 of 1 corroborated by 2+ sources
PTPN6(2)
0.056 0.500 2.08e-3 2.97e-3 ✓ sig. —
Congenital anomaly of limb Townes-brocks syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SALL1(7)
0.056 0.500 2.08e-3 2.97e-3 ✓ sig. —
Townes-brocks syndrome Vacterl association
1 gene
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1 of 1 corroborated by 2+ sources
SALL1(7)
0.056 0.500 2.08e-3 2.97e-3 ✓ sig. —
Catalepsy Tyrosine hydroxylase–deficient dopa-responsive dystonia
1 gene
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1 of 1 corroborated by 2+ sources
TH(3)
0.056 0.500 2.08e-3 2.97e-3 ✓ sig. —
Lymphedema Van maldergem syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DCHS1(6)
0.056 0.500 2.08e-3 2.97e-3 ✓ sig. —
Congenital radioulnar synostosis Loeys-dietz syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SMAD6(2)
0.056 0.500 2.08e-3 2.97e-3 ✓ sig. —
Combined deficiency of factor v and factor viii Hemophilia a
1 gene
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1 of 1 corroborated by 2+ sources
LMAN1(3)
0.056 0.500 2.08e-3 2.97e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.