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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Prostatic hyperplasia Xanthinuria
1 gene
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1 of 1 corroborated by 2+ sources
SRD5A2(2)
0.091 0.250 1.82e-3 2.68e-3 ✓ sig. —
Chiari-frommel syndrome Myoclonic dystonia
1 gene
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DRD2(1)
0.091 0.250 1.82e-3 2.68e-3 ✓ sig. Cluster 325 →
Chiari-frommel syndrome Male pseudohypopituitarism
1 gene
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LHB(1)
0.091 0.250 1.82e-3 2.68e-3 ✓ sig. —
Hereditary folate malabsorption Pancytopenia
1 gene
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1 of 1 corroborated by 2+ sources
SLC46A1(4)
0.063 0.500 1.82e-3 2.68e-3 ✓ sig. Cluster 411 →
Hyperferritinemia Neurodegeneration with brain iron accumulation
1 gene
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1 of 1 corroborated by 2+ sources
FTL(4)
0.063 0.500 1.82e-3 2.68e-3 ✓ sig. —
Congenital exomphalos Vascular brain injury
1 gene
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1 of 1 corroborated by 2+ sources
PCSK5(2)
0.063 0.500 1.82e-3 2.68e-3 ✓ sig. Cluster 94 →
Currarino syndrome Vascular brain injury
1 gene
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1 of 1 corroborated by 2+ sources
PCSK5(3)
0.063 0.500 1.82e-3 2.68e-3 ✓ sig. Cluster 94 →
Sacral defect Vascular brain injury
1 gene
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1 of 1 corroborated by 2+ sources
PCSK5(2)
0.063 0.500 1.82e-3 2.68e-3 ✓ sig. Cluster 94 →
Nephrosclerosis Whim syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CXCR4(8)
0.063 0.500 1.82e-3 2.68e-3 ✓ sig. —
Partington syndrome Wilson-turner syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LAS1L(4)
0.063 0.500 1.82e-3 2.68e-3 ✓ sig. —
Neurodegeneration with brain iron accumulation Woodhouse sakati syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DCAF17(6)
0.063 0.500 1.82e-3 2.68e-3 ✓ sig. —
Blepharitis Rosacea
1 gene
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MC1R(1)
0.063 0.500 1.82e-3 2.68e-3 ✓ sig. Cluster 1 →
Blepharitis Sebaceous gland disease
1 gene
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MC1R(1)
0.063 0.500 1.82e-3 2.68e-3 ✓ sig. —
Arrhythmogenic right ventricular dysplasia Brain compression
1 gene
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1 of 1 corroborated by 2+ sources
CTNNA3(2)
0.063 0.500 1.82e-3 2.68e-3 ✓ sig. —
Buruli ulcer Lymphoproliferative syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLC11A1(3)
0.063 0.500 1.82e-3 2.68e-3 ✓ sig. —
Carnitine acetyltransferase deficiency Neurodegeneration with brain iron accumulation
1 gene
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1 of 1 corroborated by 2+ sources
CRAT(4)
0.063 0.500 1.82e-3 2.68e-3 ✓ sig. Cluster 92 →
Anterior segment mesenchymal dysgenesis Chromosome 1q21.1 deletion syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GJA8(4)
0.063 0.500 1.82e-3 2.68e-3 ✓ sig. —
Cholangitis Chylomicron retention disease
1 gene
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DCDC2(1)
0.063 0.500 1.82e-3 2.68e-3 ✓ sig. —
Coats plus syndrome Metabolic bone disorder
1 gene
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1 of 1 corroborated by 2+ sources
CTC1(3)
0.063 0.500 1.82e-3 2.68e-3 ✓ sig. —
Autoinflammatory disease, familial, behcet-like 3 Endocrine system disease
1 gene
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1 of 1 corroborated by 2+ sources
RELA(3)
0.063 0.500 1.82e-3 2.68e-3 ✓ sig. —
Bicuspid aortic valve Diffuse palmoplantar keratoderma
1 gene
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1 of 1 corroborated by 2+ sources
DSG1(2)
0.063 0.500 1.82e-3 2.68e-3 ✓ sig. —
Donnai-barrow syndrome Metabolic bone disorder
1 gene
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1 of 1 corroborated by 2+ sources
LRP2(5)
0.063 0.500 1.82e-3 2.68e-3 ✓ sig. —
Lamellar ichthyosis Neutral lipid storage disease with ichthyosis
1 gene
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1 of 1 corroborated by 2+ sources
ABHD5(2)
0.063 0.500 1.82e-3 2.68e-3 ✓ sig. —
Cleft palate and bilateral cleft lip Coloboma, ocular, with or without hearing impairment, cleft lip/palate, and/or impaired intellectual development
1 gene
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1 of 1 corroborated by 2+ sources
PIGL(2)
0.063 0.500 1.82e-3 2.68e-3 ✓ sig. —
Congenital bilateral absence of vas deferens Spermatogenic failure, y-linked
1 gene
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1 of 1 corroborated by 2+ sources
CFTR(5)
0.063 0.500 1.82e-3 2.68e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.