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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Cardiac arrest lissencephaly 10
1 gene
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1 of 1 corroborated by 2+ sources
CEP85L(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. Cluster 4 →
Amino acid metabolism disorder lysinuric protein intolerance
1 gene
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1 of 1 corroborated by 2+ sources
SLC7A7(3)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. Cluster 83 →
Dyskeratosis congenita MECOM-associated syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MECOM(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Hydrocephalus megalencephaly-polymicrogyria-polydactyly-hydrocephalus syndrome 3
1 gene
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1 of 1 corroborated by 2+ sources
CCND2(3)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Amino acid metabolism disorder methionine adenosyltransferase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
MAT1A(3)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. Cluster 83 →
Amino acid metabolism disorder methylmalonate semialdehyde dehydrogenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ALDH6A1(3)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Congenital ocular coloboma microphthalmia, syndromic 12
1 gene
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1 of 1 corroborated by 2+ sources
RARB(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
multisystemic smooth muscle dysfunction syndrome Urethral obstruction
1 gene
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1 of 1 corroborated by 2+ sources
ACTA2(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Amino acid metabolism disorder immunodeficiency, common variable, 2
1 gene
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1 of 1 corroborated by 2+ sources
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Dyskinesia inherited neurodegenerative disorder
1 gene
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1 of 1 corroborated by 2+ sources
KIF5A(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Dyskinesia Intellectual developmental disorder dysmorphic skeletal hair
1 gene
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1 of 1 corroborated by 2+ sources
BCL11B(3)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Intellectual developmental disorder hemoglobin persistence Language development disorders
1 gene
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1 of 1 corroborated by 2+ sources
BCL11A(3)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Anhedonia Intellectual developmental disorder hypotonia spastic sleep
1 gene
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1 of 1 corroborated by 2+ sources
ANK3(3)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Dyskinesia Intellectual developmental disorder speech dysmorphic t-cell
1 gene
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1 of 1 corroborated by 2+ sources
BCL11B(5)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Cardiac arrest intrinsic cardiomyopathy
1 gene
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1 of 1 corroborated by 2+ sources
PLN(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. Cluster 4 →
Amino acid metabolism disorder isovaleric acidemia
1 gene
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1 of 1 corroborated by 2+ sources
IVD(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Cystic kidney disease joubert syndrome 24
1 gene
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1 of 1 corroborated by 2+ sources
TCTN2(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. Cluster 8 →
Congenital ocular coloboma Juvenile myoclonic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
CILK1(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
krabbe disease Leukodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
GALC(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Dyskinesia Periventricular heterotopia with microcephaly, autosomal recessive
1 gene
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1 of 1 corroborated by 2+ sources
ARFGEF2(5)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Hydrocephalus Periventricular heterotopia with microcephaly, autosomal recessive
1 gene
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1 of 1 corroborated by 2+ sources
ARFGEF2(4)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Dyskinesia Periventricular laminar heterotopia
1 gene
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1 of 1 corroborated by 2+ sources
ARFGEF2(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Hydrocephalus Periventricular laminar heterotopia
1 gene
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ARFGEF2(1)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Arthritis phelan-mcdermid syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SHANK3(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Language development disorders phelan-mcdermid syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SHANK3(3)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.