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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Adenine phosphoribosyltransferase deficiency Mucopolysaccharidosis
1 gene
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1 of 1 corroborated by 2+ sources
APRT(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Adult polyglucosan body disease Synovitis, acne, pustulosis, hyperostosis, and osteitis
1 gene
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1 of 1 corroborated by 2+ sources
GBE1(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
AKT2-related familial partial lipodystrophy Nasopharyngeal carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
AKT2(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Iron metabolism disorder TFRC-related combined immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
TFRC(3)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Centronuclear myopathy TOR1AIP1-related myopathy
1 gene
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1 of 1 corroborated by 2+ sources
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Dysarthria Troyer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SPART(4)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 239 →
Erythematosquamous dermatosis Tyrosine kinase 2 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
TYK2(3)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Severe congenital neutropenia X-linked severe congenital neutropenia
1 gene
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1 of 1 corroborated by 2+ sources
WAS(6)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Severe congenital neutropenia X-linked thrombocytopenia
1 gene
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1 of 1 corroborated by 2+ sources
WAS(4)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Dysarthria xeroderma pigmentosum group G
1 gene
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1 of 1 corroborated by 2+ sources
ERCC5(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Congenital muscular dystrophy myopathy caused by variation in CRPPA
1 gene
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1 of 1 corroborated by 2+ sources
CRPPA(4)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 14 →
Congenital muscular dystrophy myopathy caused by variation in FKRP
1 gene
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1 of 1 corroborated by 2+ sources
FKRP(5)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 14 →
Congenital muscular dystrophy myopathy caused by variation in FKTN
1 gene
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1 of 1 corroborated by 2+ sources
FKTN(4)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 14 →
Congenital muscular dystrophy myopathy caused by variation in GMPPB
1 gene
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1 of 1 corroborated by 2+ sources
GMPPB(4)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 14 →
Congenital muscular dystrophy myopathy caused by variation in POMGNT1
1 gene
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1 of 1 corroborated by 2+ sources
POMGNT1(4)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 14 →
Congenital muscular dystrophy myopathy caused by variation in POMT1
1 gene
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1 of 1 corroborated by 2+ sources
POMT1(4)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 14 →
Congenital muscular dystrophy myopathy caused by variation in POMT2
1 gene
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1 of 1 corroborated by 2+ sources
POMT2(4)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 14 →
Centronuclear myopathy myopathy, centronuclear, 5
1 gene
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1 of 1 corroborated by 2+ sources
SPEG(4)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 189 →
Centronuclear myopathy myopathy, centronuclear, 6, with fiber-type disproportion
1 gene
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1 of 1 corroborated by 2+ sources
MAP3K20(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Centronuclear myopathy nemaline myopathy 7
1 gene
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1 of 1 corroborated by 2+ sources
CFL2(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Erythematosquamous dermatosis netherton syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SPINK5(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 162 →
Febrile convulsion neurodevelopmental disorder with hypotonia, epilepsy, and absent speech
1 gene
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1 of 1 corroborated by 2+ sources
UNC13A(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Cerebral arteriovenous malformations neurodevelopmental disorder with microcephaly, ataxia, and seizures
1 gene
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1 of 1 corroborated by 2+ sources
SARS1(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 175 →
Febrile convulsion neurodevelopmental disorder with speech delay, movement abnormalities, and seizures
1 gene
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1 of 1 corroborated by 2+ sources
UNC13A(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Neutropenia, nonimmune chronic idiopathic, adult Severe congenital neutropenia
1 gene
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1 of 1 corroborated by 2+ sources
GFI1(6)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 209 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.