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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Cyclic hematopoiesis Severe congenital neutropenia
1 gene
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1 of 1 corroborated by 2+ sources
ELANE(7)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Cerebral arteriovenous malformations Dermatofibrosis lenticularis disseminata
1 gene
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1 of 1 corroborated by 2+ sources
LEMD3(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 175 →
Iron metabolism disorder lessel-kreienkamp syndrome
1 gene
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1 of 1 corroborated by 2+ sources
AGO2(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 135 →
leukodystrophy, hypomyelinating, 16 Polymyositis
1 gene
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1 of 1 corroborated by 2+ sources
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
methylmalonic aciduria, cblb type Polymyositis
1 gene
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1 of 1 corroborated by 2+ sources
MMAB(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Mucopolysaccharidosis mucopolysaccharidosis type 1
1 gene
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1 of 1 corroborated by 2+ sources
IDUA(5)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Mucopolysaccharidosis mucopolysaccharidosis type 2
1 gene
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1 of 1 corroborated by 2+ sources
IDS(7)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Mucopolysaccharidosis mucopolysaccharidosis type 3A
1 gene
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1 of 1 corroborated by 2+ sources
SGSH(6)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 134 →
Mucopolysaccharidosis mucopolysaccharidosis type 3B
1 gene
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1 of 1 corroborated by 2+ sources
NAGLU(6)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 134 →
Mucopolysaccharidosis mucopolysaccharidosis type 3C
1 gene
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1 of 1 corroborated by 2+ sources
HGSNAT(6)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 134 →
Mucopolysaccharidosis mucopolysaccharidosis type 3D
1 gene
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1 of 1 corroborated by 2+ sources
GNS(5)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 134 →
Mucopolysaccharidosis mucopolysaccharidosis type 4A
1 gene
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1 of 1 corroborated by 2+ sources
GALNS(7)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 134 →
Mucopolysaccharidosis mucopolysaccharidosis type 4B
1 gene
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1 of 1 corroborated by 2+ sources
GLB1(6)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Mucopolysaccharidosis mucopolysaccharidosis type 6
1 gene
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1 of 1 corroborated by 2+ sources
ARSB(7)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Mucopolysaccharidosis mucopolysaccharidosis type 7
1 gene
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1 of 1 corroborated by 2+ sources
GUSB(7)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 134 →
Mucopolysaccharidosis mucopolysaccharidosis type 9
1 gene
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1 of 1 corroborated by 2+ sources
HYAL1(4)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Mucopolysaccharidosis mucopolysaccharidosis-plus syndrome
1 gene
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1 of 1 corroborated by 2+ sources
VPS33A(6)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 134 →
Multiple epiphyseal dysplasia with early-onset diabetes mellitus Sialolithiasis
1 gene
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1 of 1 corroborated by 2+ sources
EIF2AK3(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 338 →
Centronuclear myopathy Multisystem disorder
1 gene
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1 of 1 corroborated by 2+ sources
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Congenital muscular dystrophy muscular dystrophy-dystroglycanopathy
1 gene
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1 of 1 corroborated by 2+ sources
LARGE1(3)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 14 →
Centronuclear myopathy myasthenic syndrome, congenital, 1b, fast-channel
1 gene
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1 of 1 corroborated by 2+ sources
CHRNA1(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Dysarthria Focal dystonia
1 gene
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1 of 1 corroborated by 2+ sources
GNAL(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
FZD4-related exudative vitreoretinopathy Syndactyly
1 gene
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1 of 1 corroborated by 2+ sources
FZD4(3)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Gingivitis Nasopharyngeal carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
TNFRSF8(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
glycogen storage disease due to glycogen branching enzyme deficiency Synovitis, acne, pustulosis, hyperostosis, and osteitis
1 gene
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1 of 1 corroborated by 2+ sources
GBE1(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.