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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Gingivitis Graft-versus-host disease
1 gene
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1 of 1 corroborated by 2+ sources
TNFRSF8(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Cushing syndrome Glucocorticoid receptor deficiency/resistance
1 gene
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1 of 1 corroborated by 2+ sources
NR3C1(6)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Graft-versus-host disease Granulomatous inflammatory arthritis-dermatitis-uveitis, familial
1 gene
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NOD2(1)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Hemorrhagic disease macrothrombocytopenia, isolated, 1, autosomal dominant
1 gene
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1 of 1 corroborated by 2+ sources
TUBB1(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. Cluster 33 →
Epidermolysis bullosa mucopolysaccharidosis type 2
1 gene
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1 of 1 corroborated by 2+ sources
IDS(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Crest syndrome Disabling pansclerotic morphea of childhood
1 gene
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1 of 1 corroborated by 2+ sources
STAT4(4)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Epidermolysa bullosa simplex and limb girdle muscular dystrophy Epidermolysis bullosa
1 gene
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1 of 1 corroborated by 2+ sources
PLEC(8)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Right isomerism Situs ambiguus
1 gene
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1 of 1 corroborated by 2+ sources
GDF1(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Crest syndrome spinocerebellar ataxia, autosomal recessive 25
1 gene
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1 of 1 corroborated by 2+ sources
ATG5(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. Cluster 25 →
Cushing syndrome Steroid 11-beta-monooxygenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CYP11B1(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Acro-dermo-ungual-lacrimal-tooth syndrome Bladder exstrophy
1 gene
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1 of 1 corroborated by 2+ sources
TP63(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. Cluster 27 →
Ankyloblepharon-ectodermal defects-cleft lip/palate Bladder exstrophy
1 gene
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1 of 1 corroborated by 2+ sources
TP63(5)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. Cluster 27 →
Bladder exstrophy Limb-mammary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TP63(5)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. Cluster 27 →
Bladder exstrophy Rudiger syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TP63(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. Cluster 27 →
Blau syndrome Graft-versus-host disease
1 gene
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1 of 1 corroborated by 2+ sources
NOD2(7)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Brachydactyly Brachydactyly with hypertension
1 gene
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1 of 1 corroborated by 2+ sources
PDE3A(5)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Ataxia Cataplexy
1 gene
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1 of 1 corroborated by 2+ sources
NPC1(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Graft-versus-host disease inflammatory bowel disease 25
1 gene
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1 of 1 corroborated by 2+ sources
IL10RB(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Beta thalassemia Intellectual developmental disorder hemoglobin persistence
1 gene
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1 of 1 corroborated by 2+ sources
BCL11A(3)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Brachydactyly Intellectual developmental disorder with retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
SCAPER(4)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Hemorrhagic disease Intracranial germ cell tumor
1 gene
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BAK1(1)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Brachydactyly leber congenital amaurosis 15
1 gene
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1 of 1 corroborated by 2+ sources
TULP1(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. Cluster 352 →
Beta thalassemia hemochromatosis type 2B
1 gene
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1 of 1 corroborated by 2+ sources
HAMP(3)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. Cluster 135 →
Beta thalassemia hemochromatosis type 3
1 gene
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1 of 1 corroborated by 2+ sources
TFR2(3)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. Cluster 135 →
Epidermolysis bullosa hereditary sensory and autonomic neuropathy type 6
1 gene
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1 of 1 corroborated by 2+ sources
DST(7)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.