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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Anorexia Atypical absence epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
NPY(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Atypical teratoid rhabdoid tumor Hematologic disease
1 gene
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1 of 1 corroborated by 2+ sources
SMARCB1(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Autoinflammation with arthritis and dyskeratosis Corneal neovascularization
1 gene
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1 of 1 corroborated by 2+ sources
NLRP1(5)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
autosomal recessive osteopetrosis 1 Dyslipidemias
1 gene
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1 of 1 corroborated by 2+ sources
TCIRG1(4)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
B3GALT6-congenital disorder of glycosylation Spondyloepiphyseal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
B3GALT6(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 211 →
Barakat syndrome Carcinogenesis
1 gene
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1 of 1 corroborated by 2+ sources
GATA3(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Benign congenital myopathy Clinodactyly
1 gene
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DMD(1)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Bifid nail Spondyloepiphyseal dysplasia
1 gene
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OFD1(1)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Aortic dissection Congenital aphakia
1 gene
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FOXE3(1)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Congenital central hypothyroidism Corneal neovascularization
1 gene
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1 of 1 corroborated by 2+ sources
TRHR(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Congenital corneal opacity syndromic complex neurodevelopmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
ZFHX4(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Congenital generalized hypercontractile muscle stiffness syndrome Nemaline myopathy
1 gene
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1 of 1 corroborated by 2+ sources
TPM3(4)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Junctional epidermolysis bullosa Salivary gland neoplasms
2 genes
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2 of 2 corroborated by 2+ sources
KRT5(2), ITGB4(6)
0.033 0.111 1.19e-3 1.92e-3 ✓ sig. —
Hereditary sensory and autonomic neuropathy Retinopathy-sensory neuropathy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FLVCR1(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Hereditary sensory and autonomic neuropathy Riley-day syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ELP1(3)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Marshall syndrome snowflake vitreoretinal degeneration
1 gene
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1 of 1 corroborated by 2+ sources
KCNJ13(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Marshall syndrome Stickler syndrome, type 4
1 gene
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1 of 1 corroborated by 2+ sources
COL9A1(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. Cluster 248 →
Combined immunodeficiency with autoimmunity and spondylometaphyseal dysplasia Hyperparathyroidism
1 gene
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1 of 1 corroborated by 2+ sources
ACP5(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Combined immunodeficiency-megaloblastic anemia due to methylenetetrahydrofolate dehydrogenase 1 deficiency Down syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MTHFD1(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
B-lymphoblastic leukemia/lymphoma congenital anomalies of kidney and urinary tract syndrome with or without hearing loss, abnormal ears, or developmental delay
1 gene
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1 of 1 corroborated by 2+ sources
PBX1(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Burkitt lymphoma congenital anomalies of kidney and urinary tract syndrome with or without hearing loss, abnormal ears, or developmental delay
1 gene
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1 of 1 corroborated by 2+ sources
PBX1(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
congenital microcephaly - severe encephalopathy - progressive cerebral atrophy syndrome Lipidoses
1 gene
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1 of 1 corroborated by 2+ sources
ASNS(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
congenital microcephaly - severe encephalopathy - progressive cerebral atrophy syndrome Lipoidosis
1 gene
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1 of 1 corroborated by 2+ sources
ASNS(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Down syndrome immunodeficiency 114, folate-responsive
1 gene
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1 of 1 corroborated by 2+ sources
SLC19A1(3)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. Cluster 113 →
Inflammatory demyelinating polyneuropathy Neuropathy
1 gene
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CNBD1(1)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. Cluster 146 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.