Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Muscle cramps Retinal dystrophy
1 gene
Show details
POC5(1)
0.056 1.000 1.10e-3 1.65e-3 ✓ sig. —
Nephronophthisis 12 Retinal dystrophy
1 gene
Show details
1 of 1 corroborated by 2+ sources
TTC21B(2)
0.056 1.000 1.10e-3 1.65e-3 ✓ sig. —
Retinal dystrophy Retinitis pigmentosa with choroidal involvement
1 gene
Show details
1 of 1 corroborated by 2+ sources
RPE65(5)
0.056 1.000 1.10e-3 1.65e-3 ✓ sig. —
Retinal dystrophy Senior-l??ken syndrome
1 gene
Show details
SCLT1(1)
0.056 1.000 1.10e-3 1.65e-3 ✓ sig. —
Enhanced s-cone syndrome Inherited retinal dystrophy
1 gene
Show details
1 of 1 corroborated by 2+ sources
NR2E3(2)
0.053 1.000 1.16e-3 1.73e-3 ✓ sig. —
Generalized resistance to thyroid hormone Inherited retinal dystrophy
1 gene
Show details
THRB(1)
0.053 1.000 1.16e-3 1.73e-3 ✓ sig. —
Goldmann-favre syndrome Inherited retinal dystrophy
1 gene
Show details
1 of 1 corroborated by 2+ sources
NR2E3(4)
0.053 1.000 1.16e-3 1.73e-3 ✓ sig. —
Inherited retinal dystrophy Mucopolysaccharidosis type 3C
1 gene
Show details
1 of 1 corroborated by 2+ sources
HGSNAT(2)
0.053 1.000 1.16e-3 1.73e-3 ✓ sig. —
Inherited retinal dystrophy Mucopolysaccharidosis type iiic (sanfilippo c)
1 gene
Show details
1 of 1 corroborated by 2+ sources
HGSNAT(2)
0.053 1.000 1.16e-3 1.73e-3 ✓ sig. —
Inherited retinal dystrophy Pituitary resistance to thyroid hormone
1 gene
Show details
THRB(1)
0.053 1.000 1.16e-3 1.73e-3 ✓ sig. —
Inherited retinal dystrophy Refetoff syndrome
1 gene
Show details
THRB(1)
0.053 1.000 1.16e-3 1.73e-3 ✓ sig. —
Inherited retinal dystrophy Retinitis pigmentosa-12, autosomal recessive
1 gene
Show details
1 of 1 corroborated by 2+ sources
CRB1(2)
0.053 1.000 1.16e-3 1.73e-3 ✓ sig. —
Inherited retinal dystrophy Snowflake vitreoretinal degeneration
1 gene
Show details
1 of 1 corroborated by 2+ sources
KCNJ13(2)
0.053 1.000 1.16e-3 1.73e-3 ✓ sig. —
Inherited retinal dystrophy Sulfatidosis, juvenile, austin type
1 gene
Show details
0.053 1.000 1.16e-3 1.73e-3 ✓ sig. —
Autosomal recessive mental retardation Cerebellar dysplasia with cysts with or without retinal dystrophy
1 gene
Show details
LAMA1(1)
0.048 1.000 1.29e-3 1.89e-3 ✓ sig. —
Amyloidosis Retinal dystrophy with inner retinal dysfunction and ganglion cell abnormalities
1 gene
Show details
ITM2B(1)
0.038 1.000 1.61e-3 2.26e-3 ✓ sig. —
Bothnia retinal dystrophy Night blindness, congenital stationary
1 gene
Show details
1 of 1 corroborated by 2+ sources
RLBP1(7)
0.036 1.000 1.74e-3 2.42e-3 ✓ sig. —
Cone rod dystrophy and hearing loss Retinal dystrophy
1 gene
Show details
1 of 1 corroborated by 2+ sources
CEP250(6)
0.053 0.500 2.19e-3 2.92e-3 ✓ sig. —
Inherited retinal dystrophy Microphthalmia with retinitis pigmentosa and ocular anomalies
1 gene
Show details
1 of 1 corroborated by 2+ sources
C1QTNF5(2)
0.050 0.500 2.32e-3 3.05e-3 ✓ sig. —
Cone dystrophy Retinal dystrophy with or without macular staphyloma
1 gene
Show details
1 of 1 corroborated by 2+ sources
CFAP410(2)
0.025 1.000 2.52e-3 3.27e-3 ✓ sig. —
Bothnia retinal dystrophy Macular degeneration
1 gene
Show details
1 of 1 corroborated by 2+ sources
RLBP1(7)
0.014 1.000 4.39e-3 5.34e-3 ✓ sig. —
Cerebral amyloid angiopathy Retinal dystrophy with inner retinal dysfunction and ganglion cell abnormalities
1 gene
Show details
1 of 1 corroborated by 2+ sources
ITM2B(3)
0.014 1.000 4.58e-3 5.54e-3 ✓ sig. —
Leber congenital amaurosis Retinal dystrophy with or without macular staphyloma
1 gene
Show details
1 of 1 corroborated by 2+ sources
CFAP410(2)
0.014 1.000 4.71e-3 5.69e-3 ✓ sig. —
Bothnia retinal dystrophy Cone-rod dystrophy
1 gene
Show details
1 of 1 corroborated by 2+ sources
RLBP1(7)
0.013 1.000 4.91e-3 5.89e-3 ✓ sig. —
Cone-rod dystrophy Retinal dystrophy with leukodystrophy
1 gene
Show details
1 of 1 corroborated by 2+ sources
ACBD5(2)
0.013 1.000 4.91e-3 5.89e-3 ✓ sig. —

Showing 25 of 143 matching pairs, sorted by significance (ascending). Click a column header to sort.