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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Frontotemporal dementia with motor neuron disease Masp2 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
TARDBP(3)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Benign hypercalcemia Hereditary chronic pancreatitis
1 gene
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1 of 1 corroborated by 2+ sources
CASR(2)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Hyper-immunoglobulin syndrome Pemphigus
1 gene
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CD40(1)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Chediak-higashi syndrome Facial nerve disorder
1 gene
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SMCHD1(1)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. Cluster 313 →
B-cell chronic lymphocytic leukemia Childhood hypophosphatasia
1 gene
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1 of 1 corroborated by 2+ sources
P2RX7(2)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Chorioretinal atrophy Prader-willi syndrome
1 gene
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-(1)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Omodysplasia Robinow syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FZD2(5)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. Cluster 127 →
Niemann-pick disease Ophthalmoplegia
1 gene
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1 of 1 corroborated by 2+ sources
NPC1(8)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Benign neonatal-infantile seizures Episodic ataxia
1 gene
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1 of 1 corroborated by 2+ sources
SCN2A(5)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Genetic recurrent myoglobinuria Rhabdomyolysis
1 gene
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1 of 1 corroborated by 2+ sources
OBSCN(3)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Digestive system neoplasms Genetic recurrent myoglobinuria
1 gene
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1 of 1 corroborated by 2+ sources
LPIN1(2)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Digestive system neoplasms Growth hormone insensitivity, partial
1 gene
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1 of 1 corroborated by 2+ sources
GHSR(3)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
FANCM Fanconi-like genomic instability disorder Male infertility spermatogenesis disorder
1 gene
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1 of 1 corroborated by 2+ sources
FANCM(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
fanconi anemia complementation group b Vacterl association
1 gene
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1 of 1 corroborated by 2+ sources
FANCB(7)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
fanconi anemia complementation group l Vacterl association
1 gene
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1 of 1 corroborated by 2+ sources
FANCL(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. Cluster 249 →
fibrodysplasia ossificans progressiva Primary angle closure glaucoma
1 gene
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1 of 1 corroborated by 2+ sources
ACVR1(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Fowler syndrome Hydrops fetalis
1 gene
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1 of 1 corroborated by 2+ sources
FLVCR2(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
FOXG1 disorder Rett syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FOXG1(6)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Growth hormone deficiency with pituitary anomalies Male infertility spermatogenesis disorder
1 gene
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HESX1(1)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Aromatic l-amino-acid decarboxylase deficiency Pheochromocytoma
1 gene
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1 of 1 corroborated by 2+ sources
DDC(4)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. Cluster 81 →
Arthrogryposis with oculomotor limitation and retinal anomalies Distal arthrogryposis
1 gene
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1 of 1 corroborated by 2+ sources
PIEZO2(6)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Arthrogryposis with oculomotor limitation and retinal anomalies Pulmonary edema
1 gene
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1 of 1 corroborated by 2+ sources
PIEZO2(4)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Atrophia bulborum heritaria Primary aldosteronism
1 gene
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1 of 1 corroborated by 2+ sources
NDP(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Atypical absence epilepsy Seasonal affective disorder
1 gene
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NPY(1)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. —
Autoimmune neurological syndrome Axonal hereditary motor and sensory neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
MFN2(2)
0.059 1.000 1.04e-3 1.74e-3 ✓ sig. Cluster 207 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.