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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Caroli disease Mainzer-saldino disease
1 gene
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WDR19(1)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. —
Micropenis Xanthinuria
1 gene
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SRD5A2(1)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. —
Epilepsy with auditory features Focal epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
DEPDC5(3)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. —
Focal epilepsy Lateral temporal lobe epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
DEPDC5(2)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. —
Galactokinase deficiency Galactosemia
1 gene
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1 of 1 corroborated by 2+ sources
GALK1(5)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. —
Genetic peripheral neuropathy Salivary gland disease
1 gene
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1 of 1 corroborated by 2+ sources
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. —
Central nervous system disease Sengers syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SOD2(2)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. —
Carney-stratakis syndrome Skeletal muscle disorder
1 gene
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1 of 1 corroborated by 2+ sources
SDHA(2)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. Cluster 81 →
Congenital chloride diarrhea Congenital secretory diarrhea
1 gene
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1 of 1 corroborated by 2+ sources
SLC26A3(5)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. Cluster 172 →
Congenital fusion of ribs Dysphoric mood
1 gene
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DLL3(1)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. —
Congenital lactic acidosis Hereditary hemophagocytic lymphohistiocytosis
1 gene
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1 of 1 corroborated by 2+ sources
STXBP2(2)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. —
Discordant ventriculoarterial connection Knobloch syndrome
1 gene
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SLC19A1(1)
0.125 0.250 1.04e-3 1.74e-3 ✓ sig. Cluster 113 →
hereditary nonpolyposis colon cancer Interstitial nephritis
1 gene
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1 of 1 corroborated by 2+ sources
FAN1(4)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Hereditary chronic pancreatitis Intestinal hypomagnesemia
1 gene
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1 of 1 corroborated by 2+ sources
TRPV6(2)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Body mass index Diastolic heart failure
1 gene
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1 of 1 corroborated by 2+ sources
FTO(3)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Breast fibrocystic disease Visual impairment
1 gene
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CSMD1(1)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. Cluster 146 →
Canavan disease Infertility
1 gene
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1 of 1 corroborated by 2+ sources
SPATA22(2)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. Cluster 242 →
Cataract-glaucoma syndrome Posterior polar cataract
1 gene
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1 of 1 corroborated by 2+ sources
PITX3(4)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Continuous spike and wave during slow wave sleep syndrome Pyridoxine dependent epilepsy
1 gene
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GRIN2A(1)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. Cluster 365 →
Charcot-marie-tooth disease, x-linked Cowchock syndrome
1 gene
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1 of 1 corroborated by 2+ sources
AIFM1(6)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Accessory skin tag Demyelinating hereditary motor and sensory neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
FBLN5(3)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. Cluster 80 →
Aicardi goutieres syndrome Deoxyguanosine kinase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SAMHD1(3)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. Cluster 150 →
Congenital hand deformities Dermatosparaxis ehlers-danlos syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Digestive system neoplasms Genitourinary disease
1 gene
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0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —
Discoid lupus erythematosus Urologic neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
OGG1(2)
0.100 0.500 1.04e-3 1.74e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.