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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Congenital sensory neuropathy Corneal ulcer
1 gene
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1 of 1 corroborated by 2+ sources
NGF(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Congenital arteriovenous malformation Conn syndrome
1 gene
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CACNA1H(1)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Cataract-microcornea syndrome Coralliform cataract
1 gene
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1 of 1 corroborated by 2+ sources
CRYGD(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 43 →
Corneal ulcer retinal dystrophy, optic nerve edema, splenomegaly, anhidrosis, and migraine headache syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ALPK1(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 399 →
Craniocerebral trauma Disseminated intravascular coagulation
1 gene
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1 of 1 corroborated by 2+ sources
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
craniosynostosis 6 Diabetic maculopathy
1 gene
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1 of 1 corroborated by 2+ sources
ZIC1(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Crigler-najjar syndrome Serum bilirubin level
1 gene
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1 of 1 corroborated by 2+ sources
UGT1A1(6)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Benign pemphigus De barsy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Darier disease De barsy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Deafness with congenital and adult-onset progressive leukodystrophy Optic neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
KARS1(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Adrenocortical carcinoma Bone marrow failure syndromes
1 gene
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1 of 1 corroborated by 2+ sources
TP53(4)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 3 →
Bone marrow failure syndromes Choroid plexus carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
TP53(5)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 3 →
Bone marrow failure syndromes Choroid plexus papilloma
1 gene
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1 of 1 corroborated by 2+ sources
TP53(6)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 3 →
Bone marrow neoplasms Optic neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
CSF3(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Cardiac-urogenital syndrome Synovitis
1 gene
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1 of 1 corroborated by 2+ sources
MYRF(7)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Cardiac-urogenital syndrome Urogenital abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
MYRF(6)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Cardiac conduction disease Cardiogenetic disease
1 gene
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1 of 1 corroborated by 2+ sources
CACNB2(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Cardiogenetic disease Congenital esophageal anomaly
1 gene
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1 of 1 corroborated by 2+ sources
CACNB2(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 404 →
Haddad syndrome Tetrahydrobiopterin-responsive phenylketonuria
1 gene
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1 of 1 corroborated by 2+ sources
PAH(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Congenital central hypoventilation syndrome Tetrahydrobiopterin-responsive phenylketonuria
1 gene
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1 of 1 corroborated by 2+ sources
PAH(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Thiamine-responsive megaloblastic anemia Venous insufficiency
1 gene
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1 of 1 corroborated by 2+ sources
SLC19A2(7)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 37 →
Disseminated intravascular coagulation Thrombomodulin-related bleeding disorder
1 gene
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1 of 1 corroborated by 2+ sources
THBD(6)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 55 →
Disseminated intravascular coagulation thrombophilia due to thrombin defect
1 gene
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1 of 1 corroborated by 2+ sources
F2(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Congenital chromosomal disease Thyroid carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
POT1(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Revesz debuse syndrome Thyroid carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
TINF2(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 130 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.