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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Bifunctional enzyme deficiency Peroxisomal disorder
1 gene
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1 of 1 corroborated by 2+ sources
HSD17B4(4)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 99 →
Optic nerve disorder Overactive bladder
1 gene
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1 of 1 corroborated by 2+ sources
EDN1(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Aniridia-cerebellar ataxia-intellectual disability syndrome Paranoid schizophrenia
1 gene
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1 of 1 corroborated by 2+ sources
PAX6(3)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 74 →
Congenital aniridia Paranoid schizophrenia
1 gene
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1 of 1 corroborated by 2+ sources
PAX6(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Optic nerve disorder Paranoid schizophrenia
1 gene
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PAX6(1)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 74 →
Choroidal dystrophy Patterned macular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
PRPH2(5)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Choroidal sclerosis Patterned macular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
PRPH2(4)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Peroxisomal disorder Refsum disease
1 gene
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1 of 1 corroborated by 2+ sources
PHYH(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Digenic hemochromatosis Polymyalgia rheumatica
1 gene
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1 of 1 corroborated by 2+ sources
HFE(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Polymyalgia rheumatica Variegate porphyria
1 gene
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HFE(1)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 196 →
Digenic hemochromatosis Porphyruria
1 gene
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1 of 1 corroborated by 2+ sources
HFE(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Birk-barel syndrome Mulibrey nanism
1 gene
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TRPM3(1)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 109 →
Bladder neck obstruction Uterine cancer
1 gene
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1 of 1 corroborated by 2+ sources
CYP19A1(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Bladder neck obstruction Pericardial effusion
1 gene
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1 of 1 corroborated by 2+ sources
PTGS2(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 375 →
Blast crisis Hyper-immunoglobulin m syndrome
1 gene
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1 of 1 corroborated by 2+ sources
AICDA(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 131 →
Bloom syndrome Hyper-immunoglobulin m syndrome
1 gene
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1 of 1 corroborated by 2+ sources
UNG(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 131 →
Bone mineral density quantitative trait locus Camurati-engelmann syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LRP5(3)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 98 →
Bronchiolitis Diffuse panbronchiolitis
1 gene
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1 of 1 corroborated by 2+ sources
MUC5B(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 197 →
Capillary leak syndrome Coronary vasospasm
1 gene
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1 of 1 corroborated by 2+ sources
PON1(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 315 →
Carcinoid tumor Lymphatic system disease
1 gene
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SLC12A2(1)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Cardiac injury Cholesterol embolism
1 gene
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1 of 1 corroborated by 2+ sources
PLAU(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 123 →
Cardiac injury Intracranial embolism and thrombosis
1 gene
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1 of 1 corroborated by 2+ sources
PLAU(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 123 →
Cataract-glaucoma syndrome Mulibrey nanism
1 gene
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1 of 1 corroborated by 2+ sources
TRPM3(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 109 →
Anonychia Hallopeau siemens disease
1 gene
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COL7A1(1)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 160 →
Anti-glomerular basement membrane disease Haploinsufficiency
1 gene
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CTLA4(1)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.