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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
oculocutaneous albinism type 2 Skin hair eye pigmentation variation
1 gene
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1 of 1 corroborated by 2+ sources
OCA2(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Osteolysis Refractory anemia
1 gene
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1 of 1 corroborated by 2+ sources
TNF(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Coronary aneurysm Eating disorder
3 genes
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CAMK1D(1), CSMD1(1), MACROD2(1)
0.029 0.094 4.41e-4 9.73e-4 ✓ sig. —
Bell's palsy Peritoneal disease
2 genes
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DISC1(1), ERBB4(1)
0.031 0.222 4.60e-4 9.84e-4 ✓ sig. —
Language development disorders Specific language disorder
2 genes
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2 of 2 corroborated by 2+ sources
CNTNAP2(2), FOXP2(4)
0.045 0.105 4.61e-4 9.85e-4 ✓ sig. Cluster 179 →
Brachydactyly Uterine polyp
2 genes
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2 of 2 corroborated by 2+ sources
BMPR1B(7), TRPS1(2)
0.045 0.095 4.80e-4 1.03e-3 ✓ sig. —
Crest syndrome Mixed connective tissue disease
2 genes
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1 of 2 corroborated by 2+ sources
FBN1(1), HLA-DRB1(2)
0.045 0.095 4.80e-4 1.03e-3 ✓ sig. —
Juvenile hyperuricemic nephropathy Liddle syndrome
1 gene
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1 of 1 corroborated by 2+ sources
REN(5)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 95 →
Liddle syndrome Tonne-kalscheuer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
REN(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 95 →
Male breast neoplasms Osteogenic sarcoma
1 gene
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1 of 1 corroborated by 2+ sources
CHEK2(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Cerebral microangiopathy Malignant peripheral nerve sheath tumor
1 gene
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1 of 1 corroborated by 2+ sources
HTRA1(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Cerebral microangiopathy Malignant triton tumor
1 gene
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1 of 1 corroborated by 2+ sources
HTRA1(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Micropenis Yunis-varon syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FIG4(5)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 103 →
Mitochondrial myopathy with sideroblastic anemia Periodic paralysis
1 gene
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ATP6(1)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 90 →
Mulibrey nanism Peripheral neuropathy, autosomal recessive, with or without impaired intellectual development
1 gene
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PNPLA7(1)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 109 →
Hemimelia of limb Multiple synostoses syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NOG(4)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Dystonia, dopa-responsive, with or without hyperphenylalaninemia Tyrosine hydroxylase–deficient dopa-responsive dystonia
1 gene
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1 of 1 corroborated by 2+ sources
TSPOAP1(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
17q12 microdeletion syndrome Uterine cancer
1 gene
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1 of 1 corroborated by 2+ sources
HNF1B(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 23 →
Renovascular hypertension Ventricular ectopy
1 gene
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1 of 1 corroborated by 2+ sources
NOS3(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Anodontia Verloes-bourguignon syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LTBP3(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Very long chain acyl-coa dehydrogenase deficiency Vulto-van silfhout-de vries syndrome
1 gene
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DLG4(1)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 60 →
Doyne honeycomb retinal dystrophy Visual system disorder
1 gene
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1 of 1 corroborated by 2+ sources
EFEMP1(7)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Pancreatic cyst Von hippel-lindau syndrome
1 gene
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1 of 1 corroborated by 2+ sources
VHL(7)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Vulto-van silfhout-de vries syndrome Yorifuji okuno syndrome
1 gene
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DLG4(1)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 60 →
Congenital scoliosis Weill-marchesani syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FBN1(7)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 52 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.