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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Gitelman syndrome neonatal severe primary hyperparathyroidism
1 gene
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1 of 1 corroborated by 2+ sources
CASR(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Gitelman syndrome Hypokalemia-hypomagnesemia
1 gene
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1 of 1 corroborated by 2+ sources
SLC12A3(6)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
glaucoma 3, primary congenital, d Hydrophthalmos
1 gene
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1 of 1 corroborated by 2+ sources
LTBP2(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Congenital retrognathism greenberg dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
LBR(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 280 →
GRHL3-related orofacial clefting Van der woude syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GRHL3(7)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Internet addiction disorder Pheochromocytoma
2 genes
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2 of 2 corroborated by 2+ sources
COMT(2), MAOB(2)
0.047 0.125 3.77e-4 8.67e-4 ✓ sig. —
Developmental disorder Diverticulitis
2 genes
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TMC1(1), ZFAND5(1)
0.047 0.125 3.77e-4 8.67e-4 ✓ sig. —
Esophageal disease Rotator cuff tear
2 genes
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SASH1(1), SLC39A8(1)
0.045 0.133 3.79e-4 8.67e-4 ✓ sig. —
Lymphatic malformation Primary microcephaly
2 genes
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2 of 2 corroborated by 2+ sources
MCPH1(3), ANGPT2(4)
0.043 0.154 3.85e-4 8.67e-4 ✓ sig. —
Hypospadias Prostatic intraepithelial neoplasia
2 genes
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2 of 2 corroborated by 2+ sources
ESR2(2), AR(4)
0.038 0.182 3.93e-4 8.75e-4 ✓ sig. —
Moyamoya angiopathy Moyamoya disease
3 genes
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3 of 3 corroborated by 2+ sources
NF1(2), RNF213(6), BRCC3(3)
0.031 0.083 4.04e-4 8.98e-4 ✓ sig. Cluster 77 →
Aortic valve disease Major salivary gland carcinoma
2 genes
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MYMK(1), SLC2A6(1)
0.023 0.333 4.04e-4 8.99e-4 ✓ sig. —
Malunion fracture Smooth surface dental caries
2 genes
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PSD3(1), SH2D4A(1)
0.042 0.154 4.08e-4 9.07e-4 ✓ sig. Cluster 287 →
Cervical polyp Nonalcoholic fatty liver disease
2 genes
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IRAK1BP1(1), MEI4(1)
0.006 1.000 4.20e-4 9.33e-4 ✓ sig. —
Bell's palsy Essential tremor
4 genes
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CDC5L(1), SUPT3H(1), SFTA2(1), TTC23(1)
0.027 0.071 4.23e-4 9.40e-4 ✓ sig. —
Chondromalacia Myositis
2 genes
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SLC6A15(1), DLGAP1(1)
0.029 0.250 4.26e-4 9.46e-4 ✓ sig. —
Hereditary parkinson disease Substance-induced psychosis
2 genes
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2 of 2 corroborated by 2+ sources
GSTP1(2), SNCA(3)
0.045 0.118 4.26e-4 9.47e-4 ✓ sig. —
Atypical femoral fracture Vertebral column disorder
2 genes
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CSMD1(1), CHST3(1)
0.041 0.154 4.31e-4 9.58e-4 ✓ sig. —
Arima syndrome CEP290-related ciliopathy
1 gene
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1 of 1 corroborated by 2+ sources
CEP290(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Arima syndrome joubert syndrome 14
1 gene
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1 of 1 corroborated by 2+ sources
TMEM237(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
arrhythmogenic right ventricular dysplasia 5 Emery-dreifuss muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
TMEM43(6)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 65 →
arthrogryposis multiplex congenita 3, myogenic type Emery-dreifuss muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
SYNE1(7)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Arthrogryposis with ectodermal dysplasia Pendred syndrome
1 gene
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OTOF(1)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Arthrogryposis with perthes disease and gaze palsy Congenital deformity of clavicle
1 gene
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1 of 1 corroborated by 2+ sources
NEK9(4)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 59 →
Arthrogryposis with perthes disease and gaze palsy Congenital deformity of elbow
1 gene
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1 of 1 corroborated by 2+ sources
NEK9(4)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 59 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.