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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Adrenocortical carcinoma Embryonal nuclear cataract
1 gene
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1 of 1 corroborated by 2+ sources
TP53(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Choroid plexus carcinoma Embryonal nuclear cataract
1 gene
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1 of 1 corroborated by 2+ sources
TP53(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
EPHB4-associated vascular malformation spectrum Vein of galen aneurysm
1 gene
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1 of 1 corroborated by 2+ sources
EPHB4(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 144 →
Epidermolysa bullosa simplex and limb girdle muscular dystrophy Other epidermolysis bullosa
1 gene
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1 of 1 corroborated by 2+ sources
PLEC(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Growth retardation, mild developmental delay, chronic hepatitis syndrome Thrombocythemia
1 gene
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1 of 1 corroborated by 2+ sources
SH2B3(5)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Growth retardation, mild developmental delay, chronic hepatitis syndrome Thrombocytosis
1 gene
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1 of 1 corroborated by 2+ sources
SH2B3(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Heme oxygenase deficiency Hemolysis
1 gene
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1 of 1 corroborated by 2+ sources
HMOX1(7)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 371 →
Heme oxygenase deficiency Pancreatic diseases
1 gene
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1 of 1 corroborated by 2+ sources
HMOX1(7)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
hemochromatosis type 4 Hemolysis
1 gene
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1 of 1 corroborated by 2+ sources
SLC40A1(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Hemolysis X-linked distal spinal muscular atrophy
1 gene
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1 of 1 corroborated by 2+ sources
ATP7A(5)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Hemolysis menkes disease
1 gene
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1 of 1 corroborated by 2+ sources
ATP7A(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Hereditary diffuse gastric and lobular breast cancer syndrome Lobular carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
CDH1(4)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Hereditary neuropathy with liability to pressure palsies Hereditary sensory and motor neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
PMP22(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Exanthema hereditary von Willebrand disease
1 gene
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1 of 1 corroborated by 2+ sources
VWF(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Bockenheimer syndrome Hydrophthalmos
1 gene
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TEK(1)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Hydrophthalmos Mucocutaneous venous malformations
1 gene
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1 of 1 corroborated by 2+ sources
TEK(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Breast implant-associated anaplastic large cell lymphoma hyper-IgE recurrent infection syndrome 1, autosomal dominant
1 gene
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1 of 1 corroborated by 2+ sources
STAT3(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Breast implant-associated anaplastic large cell lymphoma Hyper-ige syndrome
1 gene
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STAT3(1)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Hypereosinophilic syndrome Myeloproliferative disease, unclassifiable
1 gene
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1 of 1 corroborated by 2+ sources
PDGFRB(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Hypereosinophilic syndrome thrombocytopenia 5
1 gene
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1 of 1 corroborated by 2+ sources
ETV6(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Hypereosinophilic syndrome Osteoglophonic dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
FGFR1(7)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 185 →
Hartsfield-Bixler-Demyer syndrome Hypereosinophilic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FGFR1(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 185 →
Congenital hyperinsulinism hyperinsulinemic hypoglycemia, familial, 1
1 gene
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1 of 1 corroborated by 2+ sources
ABCC8(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Congenital hyperinsulinism hyperinsulinemic hypoglycemia, familial, 2
1 gene
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1 of 1 corroborated by 2+ sources
KCNJ11(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Congenital hyperinsulinism hyperinsulinism due to glucokinase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GCK(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.