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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
long qt syndrome 5 Long qt syndrome, digenic
1 gene
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1 of 1 corroborated by 2+ sources
KCNE1(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
dilated cardiomyopathy 1E Long qt syndrome, digenic
1 gene
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1 of 1 corroborated by 2+ sources
SCN5A(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Magnesium metabolism disorder Tetany
1 gene
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1 of 1 corroborated by 2+ sources
CNNM2(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 341 →
Magnesium metabolism disorder renal hypomagnesemia 4
1 gene
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1 of 1 corroborated by 2+ sources
EGF(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 341 →
Magnesium metabolism disorder Primary hypomagnesemia with hypocalciuria
1 gene
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1 of 1 corroborated by 2+ sources
FXYD2(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Magnesium metabolism disorder renal hypomagnesemia 2
1 gene
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1 of 1 corroborated by 2+ sources
FXYD2(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Malocclusion Prognathism
1 gene
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1 of 1 corroborated by 2+ sources
ADAMTS1(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Malocclusion poirier-bienvenu neurodevelopmental syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CSNK2B(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Malt lymphoma Mucosa-associated lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
BCL10(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
MED12-related intellectual disability syndrome Simpson-golabi-behmel syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MED12(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 200 →
Li-fraumeni syndrome melanoma-pancreatic cancer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CDKN2A(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Aortic rupture menkes disease
1 gene
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1 of 1 corroborated by 2+ sources
ATP7A(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Congenital iris coloboma microphthalmia, isolated, with coloboma 7
1 gene
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1 of 1 corroborated by 2+ sources
ABCB6(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 272 →
Congenital small ears Microtia
1 gene
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1 of 1 corroborated by 2+ sources
HOXA2(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Miller-dieker syndrome Postaxial acrofacial dysostosis
1 gene
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1 of 1 corroborated by 2+ sources
DHODH(5)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 223 →
Toxic nodular goiter Uterine polyp
2 genes
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NFIA(1), TERT(1)
0.050 0.118 3.12e-4 7.71e-4 ✓ sig. —
Moyamoya disease Peripheral vascular disease
3 genes
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HDAC9(1), TWIST1(1), DOK7(1)
0.032 0.091 3.11e-4 7.71e-4 ✓ sig. —
Developmental dysplasia of the hip Multiple system atrophy
2 genes
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LOXL4(1), PYROXD2(1)
0.047 0.143 3.29e-4 7.81e-4 ✓ sig. —
Appendicitis Testicular disease
2 genes
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1 of 2 corroborated by 2+ sources
PPP3CA(3), INHBB(1)
0.047 0.143 3.29e-4 7.81e-4 ✓ sig. —
Multinodular goiter Urinary system disease
2 genes
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BCAS3(1), MACROD2(1)
0.048 0.133 3.30e-4 7.83e-4 ✓ sig. —
Hereditary parkinson disease Secondary parkinson disease
2 genes
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2 of 2 corroborated by 2+ sources
PRKN(2), SNCA(4)
0.048 0.133 3.30e-4 7.83e-4 ✓ sig. Cluster 256 →
Epidermolysis bullosa Fraser syndrome
2 genes
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1 of 2 corroborated by 2+ sources
FREM2(6), BCLAF1(1)
0.050 0.100 3.32e-4 7.87e-4 ✓ sig. —
Brachydactyly Cryptorchidism
2 genes
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1 of 2 corroborated by 2+ sources
HOXD13(6), NIPBL(1)
0.050 0.100 3.32e-4 7.87e-4 ✓ sig. —
Benign prostatic hyperplasia Testicular carcinoma
3 genes
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HNF1B(1), TERT(1), CLPTM1L(1)
0.032 0.086 3.37e-4 7.99e-4 ✓ sig. —
Osteonecrosis Sarcopenia
2 genes
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PTPRD(1), DMAC1(1)
0.041 0.182 3.39e-4 8.04e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.