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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
2q37 microdeletion syndrome Chromosome 2q37 deletion syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HDAC4(4)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Aapoai amyloidosis Visceral amyloidosis
1 gene
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1 of 1 corroborated by 2+ sources
APOA1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Aarskog-scott syndrome, x-linked Congenital foot deformity
1 gene
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1 of 1 corroborated by 2+ sources
FGD1(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 27 →
Abcd syndrome Waardenburg-shah syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EDNRB(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Acatalasia Ureteral calculi
1 gene
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1 of 1 corroborated by 2+ sources
CAT(4)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 285 →
Acro-dermo-ungual-lacrimal-tooth syndrome Cleft lip and cleft of alveolar process of maxilla
1 gene
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1 of 1 corroborated by 2+ sources
TP63(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 27 →
Acrofacial dysostosis SF3B4-related acrofacial dysostosis
1 gene
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1 of 1 corroborated by 2+ sources
SF3B4(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 289 →
Agat deficiency De toni-debre-fanconi syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GATM(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 99 →
Agat deficiency Fanconi renotubular syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GATM(6)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 99 →
ALS2-related motor neuron disease Hypertyrosinemia
1 gene
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1 of 1 corroborated by 2+ sources
ALS2(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 247 →
Alys amyloidosis Visceral amyloidosis
1 gene
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LYZ(1)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 228 →
Aminoacylase deficiency Becker nevus syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ACTB(4)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 186 →
Aminoacylase deficiency Congenital smooth muscle hamartoma
1 gene
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1 of 1 corroborated by 2+ sources
ACTB(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 186 →
Aminoacylase deficiency Developmental malformations-deafness-dystonia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ACTB(4)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 186 →
Aminoacylase deficiency Dystonia-deafness syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ACTB(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 186 →
ACTB-associated syndromic thrombocytopenia Aminoacylase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ACTB(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 186 →
amyloidosis, hereditary systemic 6 Visceral amyloidosis
1 gene
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1 of 1 corroborated by 2+ sources
B2M(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 228 →
amyotrophic lateral sclerosis type 1 Ureteral calculi
1 gene
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1 of 1 corroborated by 2+ sources
SOD1(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 285 →
amyotrophic lateral sclerosis type 11 Micropenis
1 gene
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1 of 1 corroborated by 2+ sources
FIG4(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 103 →
Anaplastic oligoastrocytoma Central nervous system disease
1 gene
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1 of 1 corroborated by 2+ sources
IDH2(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Anaplastic oligoastrocytoma Combined d-2- and l-2-hydroxyglutaric aciduria
1 gene
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1 of 1 corroborated by 2+ sources
IDH2(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Angel-shaped phalangoepiphyseal dysplasia Multiple synostoses syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GDF5(6)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Anhidrotic ectodermal dysplasia Craniofrontonasal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
EDA(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 117 →
Ankyloblepharon-ectodermal defects-cleft lip/palate Cleft lip and cleft of alveolar process of maxilla
1 gene
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1 of 1 corroborated by 2+ sources
TP63(5)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 27 →
Anodontia Severe neonatal spondylometaphyseal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
SBDS(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 159 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.