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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
focal segmental glomerulosclerosis 7 Renal cysts and diabetes syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PAX2(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Frontonasal dysplasia with alopecia and genital anomaly Potocki-shaffer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ALX4(5)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 93 →
Desmoid tumor gastric adenocarcinoma and proximal polyposis of the stomach
1 gene
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1 of 1 corroborated by 2+ sources
APC(7)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 41 →
gastric adenocarcinoma and proximal polyposis of the stomach Turcot syndrome
1 gene
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1 of 1 corroborated by 2+ sources
APC(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Gastrointestinal defects and immunodeficiency syndrome Multiple intestinal atresia
1 gene
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1 of 1 corroborated by 2+ sources
TTC7A(6)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 267 →
Gastroschisis Salt-sensitive hypertension
1 gene
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ADD1(1)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
GATA6-related congenital heart disease with or without pancreatic agenesis or neonatal diabetes Partial pancreatic agenesis
1 gene
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1 of 1 corroborated by 2+ sources
GATA6(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Congenital pectus carinatum Geleophysic dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
FBN1(5)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 52 →
Coronary artery dissection Geleophysic dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
FBN1(5)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 52 →
Genetic hemolytic uremic syndrome Thrombotic microangiopathy
1 gene
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CFH(1)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 107 →
Atypical hemolytic uremic syndrome Genetic hemolytic uremic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CFH(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 107 →
Genetic infertility Olmsted syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SPATA22(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 242 →
Genetic neurodegenerative disease inherited neurodegenerative disorder
1 gene
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1 of 1 corroborated by 2+ sources
KIF5A(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Giant cell tumor of tendon sheath Renal cysts and diabetes syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HNF1B(6)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 23 →
Glucocorticoid deficiency with achalasia Intellectual developmental disorder movement cerebellar
1 gene
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1 of 1 corroborated by 2+ sources
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 295 →
Glycine n-methyltransferase deficiency S-adenosylhomocysteine hydrolase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GNMT(5)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 83 →
Glycine n-methyltransferase deficiency Sulfur amino acid metabolism disorder
1 gene
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1 of 1 corroborated by 2+ sources
GNMT(5)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 83 →
Glycine n-methyltransferase deficiency Hepatic methionine adenosyltransferase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GNMT(5)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 83 →
Avascular necrosis of femoral head GNPTAB-mucolipidosis
1 gene
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1 of 1 corroborated by 2+ sources
GNPTAB(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 11 →
greig cephalopolysyndactyly syndrome White sutton syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GLI3(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 142 →
palatal anomalies-widely spaced teeth-facial dysmorphism-developmental delay syndrome Primary bilateral macronodular adrenal hyperplasia
1 gene
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1 of 1 corroborated by 2+ sources
KDM1A(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 409 →
Palmoplantar keratoderma and congenital alopecia Perniola krajewska carnevale syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LSS(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 362 →
pancreatic agenesis 1 Partial pancreatic agenesis
1 gene
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1 of 1 corroborated by 2+ sources
PDX1(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Pancreatic beta-cell agenesis with neonatal diabetes mellitus Partial pancreatic agenesis
1 gene
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PTF1A(1)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Papillorenal syndrome Renal cysts and diabetes syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PAX2(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.