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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Cathepsin a-related arteriopathy, strokes, and leukoencephalopathy Galactosialidosis
1 gene
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1 of 1 corroborated by 2+ sources
CTSA(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Caveolinopathy Chromosome 3p25 monosomy
1 gene
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1 of 1 corroborated by 2+ sources
CAV3(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 217 →
Caveolinopathy Rippling muscle disease
1 gene
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1 of 1 corroborated by 2+ sources
CAV3(8)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 217 →
CBL-related disorder Early onset vitamin b6 dependent epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
CBL(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Central centrifugal cicatricial alopecia Uncombable hair syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PADI3(6)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
CEP290-related ciliopathy Congenital kidney anomaly
1 gene
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1 of 1 corroborated by 2+ sources
CEP290(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 70 →
Cerebellar ataxia with deafness and narcolepsy Dominantly inherited sensory neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
DNMT1(5)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Cerebellar ataxia, deafness, and narcolepsy Dominantly inherited sensory neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
DNMT1(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Cerebellar ataxia, impaired intellectual development, and dysequilibrium Cerebellar hypoplasia
1 gene
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1 of 1 corroborated by 2+ sources
VLDLR(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 317 →
Cerebellar cortical atrophy Griscelli syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MYO5A(7)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Cerebral arterial disease Cerebral artery occlusion
1 gene
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ADGRE3(1)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Cerebral arteriopathy with subcortical infarcts and leukoencephalopathy inherited thrombocytopenia
1 gene
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1 of 1 corroborated by 2+ sources
NOTCH3(6)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Cerebral arteriopathy with subcortical infarcts and leukoencephalopathy cerebral arteriopathy, autosomal recessive, with subcortical infarcts and leukoencephalopathy 1
1 gene
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1 of 1 corroborated by 2+ sources
NOTCH3(6)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Cerebral creatine deficiency syndrome Guanidinoacetate methyltransferase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GAMT(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 358 →
Cerebral creatine deficiency syndrome Creatine transporter deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A8(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 358 →
Cerebral embolism Hyperphosphatemic tumoral calcinosis
1 gene
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1 of 1 corroborated by 2+ sources
KL(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 407 →
Cerebral embolism Hypercalcemic tumoral calcinosis
1 gene
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KL(1)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 407 →
Cerebral sinovenous thrombosis Congenital factor ii deficiency
1 gene
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1 of 1 corroborated by 2+ sources
F2(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 388 →
Cerebral sinovenous thrombosis Congenital prothrombin deficiency
1 gene
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1 of 1 corroborated by 2+ sources
F2(5)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 388 →
Cerebral sinovenous thrombosis thrombophilia due to thrombin defect
1 gene
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1 of 1 corroborated by 2+ sources
F2(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 388 →
Cerebral sinovenous thrombosis Congenital factor v deficiency
1 gene
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1 of 1 corroborated by 2+ sources
F5(5)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Cerebral sinovenous thrombosis East texas bleeding disorder
1 gene
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1 of 1 corroborated by 2+ sources
F5(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Cardiac tamponade Cerebral thrombosis
1 gene
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1 of 1 corroborated by 2+ sources
PLAT(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Cerebral thrombosis Craniocerebral trauma
1 gene
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1 of 1 corroborated by 2+ sources
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Cerebral thrombosis Hereditary antithrombin deficiency
1 gene
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1 of 1 corroborated by 2+ sources
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.