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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Autoinflammatory syndrome, familial, X-linked, Behcet-like 2 X-linked agammaglobulinemia with growth hormone deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ELF4(4)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
autosomal dominant centronuclear myopathy X-linked centronuclear myopathy
1 gene
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1 of 1 corroborated by 2+ sources
DNM2(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 59 →
autosomal recessive spinocerebellar ataxia 10 Neutral lipid storage disease with ichthyosis
1 gene
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1 of 1 corroborated by 2+ sources
ANO10(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
autosomal recessive spinocerebellar ataxia 20 Intellectual developmental disorder dysmorphic cerebellar
1 gene
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1 of 1 corroborated by 2+ sources
SNX14(3)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Avellino corneal dystrophy Thiel-behnke corneal dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
TGFBI(4)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Avoidant restrictive food intake disorder Cavitary optic disk anomaly
1 gene
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1 of 1 corroborated by 2+ sources
APOE(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 177 →
Axenfeld anomaly FOXC1-related anterior segment dysgenesis
1 gene
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1 of 1 corroborated by 2+ sources
FOXC1(3)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 253 →
Axenfeld anomaly Ring dermoid of cornea
1 gene
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1 of 1 corroborated by 2+ sources
PITX2(6)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 253 →
Axonal hereditary motor and sensory neuropathy Nail dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
MFN2(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
BAP1-related tumor predisposition syndrome Central nervous system neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
BAP1(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Baraitser-winter cerebrofrontofacial syndrome Becker nevus syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ACTB(6)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 186 →
Baraitser-winter cerebrofrontofacial syndrome Congenital smooth muscle hamartoma
1 gene
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1 of 1 corroborated by 2+ sources
ACTB(6)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 186 →
Baraitser-winter cerebrofrontofacial syndrome Developmental malformations-deafness-dystonia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ACTB(7)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 186 →
Baraitser-winter cerebrofrontofacial syndrome Dystonia-deafness syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ACTB(6)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 186 →
Baralle-macken syndrome Intellectual developmental disorder dysmorphic microcephaly
1 gene
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1 of 1 corroborated by 2+ sources
COPB1(5)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Barber-say syndrome Focal facial dermal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
TWIST2(6)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Bart-pumphrey syndrome Deafness, digenic
1 gene
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1 of 1 corroborated by 2+ sources
GJB2(3)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 322 →
Bart-pumphrey syndrome Senter syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GJB2(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Bart-pumphrey syndrome Vohwinkel syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GJB2(3)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 322 →
Bartsocas-papas syndrome Cocoon syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CHUK(6)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Bartsocas-papas syndrome Combined immunodeficiency-hypogammaglobulinemia-skeletal anomalies syndrome due to ikbka deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CHUK(6)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Bartsocas-papas syndrome Curly hair ankyloblepharon nail dysplasia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RIPK4(5)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Beare-stevenson cutis gyrata syndrome Congenital aural atresia
1 gene
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1 of 1 corroborated by 2+ sources
FGFR2(3)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 85 →
Beare-stevenson cutis gyrata syndrome Crouzon syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FGFR2(7)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 85 →
Becker generalized myotonia Congenital myotonia
1 gene
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1 of 1 corroborated by 2+ sources
CLCN1(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.