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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Congenital nervous system disorder neurodevelopmental disorder with hypotonia, epilepsy, and absent speech
1 gene
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1 of 1 corroborated by 2+ sources
UNC13A(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Congenital pectus carinatum Congenital scoliosis
1 gene
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FBN1(1)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 52 →
Congenital pectus carinatum Crst syndrome
1 gene
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FBN1(1)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 52 →
Congenital pectus carinatum Dilatation of pulmonary artery
1 gene
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FBN1(1)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 52 →
Congenital porencephaly Familial hematuria-retinal arteriolar tortuosity-contractures syndrome
1 gene
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1 of 1 corroborated by 2+ sources
COL4A1(3)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Congenital prothrombin deficiency Hemophilia b
1 gene
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1 of 1 corroborated by 2+ sources
F2(4)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 388 →
Congenital pulmonary valve atresia Pancreatic hypoplasia-diabetes-congenital heart disease syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GATA4(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 60 →
Congenital pulmonary valve atresia Partial atrioventricular canal defect
1 gene
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1 of 1 corroborated by 2+ sources
GATA4(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 60 →
Congenital radioulnar synostosis SMAD6-related disease
1 gene
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1 of 1 corroborated by 2+ sources
SMAD6(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Congenital reticular ichthyosiform erythroderma Diffuse nonepidermolytic palmoplantar keratoderma
1 gene
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1 of 1 corroborated by 2+ sources
KRT1(5)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 230 →
Congenital reticular ichthyosiform erythroderma Keratosis of greither
1 gene
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1 of 1 corroborated by 2+ sources
KRT1(3)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 230 →
Congenital scoliosis Coronary artery dissection
1 gene
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FBN1(1)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 52 →
Congenital short bowel syndrome Otopalatodigital spectrum disorder
1 gene
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1 of 1 corroborated by 2+ sources
FLNA(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 62 →
Congenital short bowel syndrome Terminal osseous dysplasia with pigmentary defects
1 gene
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1 of 1 corroborated by 2+ sources
FLNA(6)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 62 →
Congenital short bowel syndrome X-linked ehlers-danlos syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FLNA(3)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 62 →
Congenital short bowel syndrome X-linked keloid scarring syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FLNA(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 62 →
Congenital sodium diarrhea Duodenal atresia
1 gene
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1 of 1 corroborated by 2+ sources
GUCY2C(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 172 →
Congenital thrombotic thrombocytopenic purpura hereditary thrombophilia due to congenital protein C deficiency
1 gene
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1 of 1 corroborated by 2+ sources
PROC(3)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 314 →
Congenital thrombotic thrombocytopenic purpura Upshaw-schulman syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 314 →
Congenital vertical talus Vertical talus
1 gene
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1 of 1 corroborated by 2+ sources
HOXD10(6)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Conjunctivitis Developmental delay with autism spectrum disorder
1 gene
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1 of 1 corroborated by 2+ sources
HERC2(4)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 155 →
Conjunctivitis hypoplasminogenemia
1 gene
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1 of 1 corroborated by 2+ sources
PLG(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 155 →
Contiguous abcd1-dxs1375e deletion syndrome Deafness, dystonia, and cerebral hypomyelination
1 gene
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1 of 1 corroborated by 2+ sources
BCAP31(3)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. —
Continuous spike and wave during sleep syndrome Continuous spike and wave during slow wave sleep syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GRIN2A(2)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 365 →
Continuous spike and wave during slow wave sleep syndrome Focal epilepsy with speech disorder and impaired intellectual development
1 gene
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1 of 1 corroborated by 2+ sources
GRIN2A(3)
0.333 1.000 1.30e-4 3.93e-4 ✓ sig. Cluster 365 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.