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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
focal segmental glomerulosclerosis 3, susceptibility to inherited focal segmental glomerulosclerosis
1 gene
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CD2AP(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
focal segmental glomerulosclerosis 7 Papillorenal syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PAX2(4)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
focal segmental glomerulosclerosis 9 Ventriculomegaly with cystic kidney disease
1 gene
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1 of 1 corroborated by 2+ sources
CRB2(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
frontotemporal dementia and/or amyotrophic lateral sclerosis 8 Multiple familial trichoepithelioma
1 gene
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1 of 1 corroborated by 2+ sources
CYLD(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
galactose epimerase deficiency Udp-glucose 4-epimerase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GALE(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 340 →
Gallbladder agenesis megalencephaly-polydactyly syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MYCN(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
gapo syndrome Growth retardation, alopecia, pseudoanodontia and optic atrophy
1 gene
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1 of 1 corroborated by 2+ sources
ANTXR1(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
GATA1-Related X-Linked Cytopenia Thrombocytopenia with dyserythropoietic anemia
1 gene
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1 of 1 corroborated by 2+ sources
GATA1(8)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 125 →
GATA4-related congenital heart disease with or without pancreatic hypoplasia or diabetes Testicular anomaly with congenital heart disease
1 gene
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1 of 1 corroborated by 2+ sources
GATA4(6)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 60 →
Gaucher disease due to saposin C deficiency Krabbe disease due to saposin A deficiency
1 gene
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PSAP(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 118 →
Genetic hyperferritinemia without iron overload hereditary hyperferritinemia with congenital cataracts
1 gene
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1 of 1 corroborated by 2+ sources
FTL(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Genetic hyperferritinemia without iron overload neuroferritinopathy
1 gene
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1 of 1 corroborated by 2+ sources
FTL(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Genetic renal tubular disease Hypokalemia-hypomagnesemia
1 gene
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1 of 1 corroborated by 2+ sources
SLC12A3(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Giant cell tumor of tendon sheath Renal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
HNF1B(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 23 →
Giant cell tumor of tendon sheath Multicystic dysplastic kidney
1 gene
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1 of 1 corroborated by 2+ sources
HNF1B(4)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 23 →
Glass syndrome Satb2 associated syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SATB2(4)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
glaucoma 3, primary congenital, d Microspherophakia
1 gene
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1 of 1 corroborated by 2+ sources
LTBP2(6)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
glomerulopathy with fibronectin deposits 2 spondylometaphyseal dysplasia, 'corner fracture' type
1 gene
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FN1(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Glutaminase deficiency infantile cataract, skin abnormalities, glutamate excess, and impaired intellectual development
1 gene
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1 of 1 corroborated by 2+ sources
GLS(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Glycerol kinase deficiency inborn glycerol kinase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GK(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
glycogen storage disease II Glycoprotein storage disease
1 gene
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1 of 1 corroborated by 2+ sources
GAA(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
glycogen storage disorder due to hepatic glycogen synthase deficiency Hepatic glycogen synthase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GYS2(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Glycoprotein vi deficiency platelet-type bleeding disorder 11
1 gene
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1 of 1 corroborated by 2+ sources
GP6(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
GM3 synthase deficiency Salt and pepper developmental regression syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ST3GAL5(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Granulomatous inflammatory arthritis-dermatitis-uveitis, familial Yao syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NOD2(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 382 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.