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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Autoinflammatory disease, multisystem, with immune dysregulation, x-linked Early-onset immune dysregulation with autoimmunity due to dock11 partial deficiency
1 gene
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1 of 1 corroborated by 2+ sources
DOCK11(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Autoinflammatory syndrome with cytopenia, hyperzincemia, and hypercalprotectinemia Papa syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PSTPIP1(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Autoinflammatory syndrome with immunodeficiency Autoinflammatory syndrome, familial, with or without immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
SOCS1(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 321 →
Autoinflammatory syndrome, familial, X-linked, Behcet-like 2 X-linked immune dysregulation with inflammatory bowel disease due to elf4 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ELF4(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
autosomal dominant osteopetrosis 2 hypopigmentation, organomegaly, and delayed myelination and development
1 gene
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CLCN7(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
autosomal dominant osteopetrosis 2 autosomal recessive osteopetrosis 4
1 gene
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CLCN7(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
autosomal recessive cutis laxa type 2A Wrinkly skin syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Autosomal recessive hypomyelinating leukodystrophy hypomyelinating leukodystrophy 13
1 gene
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1 of 1 corroborated by 2+ sources
HIKESHI(4)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
autosomal recessive osteopetrosis 1 dysosteosclerosis
1 gene
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TCIRG1(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
autosomal recessive osteopetrosis 4 hypopigmentation, organomegaly, and delayed myelination and development
1 gene
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CLCN7(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
autosomal recessive osteopetrosis 6 osteopetrosis, autosomal dominant 3
1 gene
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PLEKHM1(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
autosomal recessive severe congenital neutropenia due to G6PC3 deficiency Dursun syndrome
1 gene
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1 of 1 corroborated by 2+ sources
G6PC3(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
autosomal recessive spinocerebellar ataxia 14 spinocerebellar ataxia type 5
1 gene
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SPTBN2(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Avellino corneal dystrophy Groenouw corneal dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
TGFBI(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Avoidant restrictive food intake disorder Dysbetalipoproteinemia
1 gene
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1 of 1 corroborated by 2+ sources
APOE(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 177 →
Axonal hereditary motor and sensory neuropathy multiple symmetric lipomatosis with partial lipodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
MFN2(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 207 →
Axonal hereditary motor and sensory neuropathy Charcot-Marie-Tooth disease type 2A2
1 gene
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1 of 1 corroborated by 2+ sources
MFN2(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 207 →
Ayazi syndrome Choroideremia-deafness-obesity syndrome
1 gene
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1 of 1 corroborated by 2+ sources
POU3F4(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 251 →
Ayazi syndrome Chromosome xq21 deletion syndrome
1 gene
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POU3F4(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 251 →
Ayazi syndrome Xq21 microdeletion syndrome
1 gene
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1 of 1 corroborated by 2+ sources
POU3F4(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 251 →
B4GALT1-congenital disorder of glycosylation Combined low ldl and fibrinogen
1 gene
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1 of 1 corroborated by 2+ sources
B4GALT1(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Bailey-Bloch congenital myopathy Native american myopathy
1 gene
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1 of 1 corroborated by 2+ sources
STAC3(4)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
BAP1-related tumor predisposition syndrome Mucoepidermoid carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
BAP1(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 389 →
Barakat syndrome hypoparathyroidism-deafness-renal disease syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GATA3(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Barber-say syndrome Congenital ectodermal dysplasia of face
1 gene
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1 of 1 corroborated by 2+ sources
TWIST2(6)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.