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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Abetalipoproteinemia Fatty liver, alcoholic
1 gene
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1 of 1 corroborated by 2+ sources
MTTP(2)
0.011 1.000 5.59e-3 6.78e-3 ✓ sig. —
Fatty liver Oxysterol accumulation disorder
1 gene
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1 of 1 corroborated by 2+ sources
CYP7B1(3)
0.011 1.000 6.04e-3 7.27e-3 ✓ sig. —
Fatty liver Mucoepithelial dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
SREBF1(3)
0.011 1.000 6.04e-3 7.27e-3 ✓ sig. —
Fatty liver Urban-schosser-spohr syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SREBF1(2)
0.011 1.000 6.04e-3 7.27e-3 ✓ sig. —
Fatty liver X-linked ichthyosis with steryl-sulfatase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
STS(3)
0.011 1.000 6.04e-3 7.27e-3 ✓ sig. —
Fatty liver mitochondrial trifunctional protein deficiency
1 gene
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1 of 1 corroborated by 2+ sources
HADHB(3)
0.011 1.000 6.04e-3 7.27e-3 ✓ sig. —
Abetalipoproteinemia Fatty liver
1 gene
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1 of 1 corroborated by 2+ sources
MTTP(3)
0.011 1.000 6.04e-3 7.27e-3 ✓ sig. —
Fatty liver long chain 3-hydroxyacyl-coa dehydrogenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
HADHA(2)
0.011 1.000 6.04e-3 7.27e-3 ✓ sig. —
congenital disorder of glycosylation, type iit Fatty liver
1 gene
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1 of 1 corroborated by 2+ sources
GALNT2(2)
0.011 1.000 6.04e-3 7.27e-3 ✓ sig. —
Corticosteroid-binding globulin deficiency Fatty liver
1 gene
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1 of 1 corroborated by 2+ sources
0.011 1.000 6.04e-3 7.27e-3 ✓ sig. —
Amelocerebrohypohidrotic syndrome Fatty liver, alcoholic
1 gene
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1 of 1 corroborated by 2+ sources
SLC13A5(3)
0.011 0.500 1.11e-2 1.25e-2 ✓ sig. —
Amelocerebrohypohidrotic syndrome Fatty liver
1 gene
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1 of 1 corroborated by 2+ sources
SLC13A5(4)
0.011 0.500 1.20e-2 1.35e-2 ✓ sig. —
hereditary spastic paraplegia 62 Nonalcoholic fatty liver disease
1 gene
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1 of 1 corroborated by 2+ sources
ERLIN1(2)
0.003 1.000 2.05e-2 2.23e-2 ✓ sig. —
foveal hypoplasia - optic nerve decussation defect - anterior segment dysgenesis syndrome Nonalcoholic fatty liver disease
1 gene
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1 of 1 corroborated by 2+ sources
SLC38A8(2)
0.003 1.000 2.05e-2 2.23e-2 ✓ sig. —
Nonalcoholic fatty liver disease platelet abnormalities with eosinophilia and immune-mediated inflammatory disease
1 gene
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1 of 1 corroborated by 2+ sources
ARPC1B(2)
0.003 1.000 2.05e-2 2.23e-2 ✓ sig. —
Carboxypeptidase n deficiency Nonalcoholic fatty liver disease
1 gene
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1 of 1 corroborated by 2+ sources
CPN1(4)
0.003 1.000 2.05e-2 2.23e-2 ✓ sig. —
autosomal recessive cerebellar ataxia Nonalcoholic fatty liver disease
1 gene
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1 of 1 corroborated by 2+ sources
CWF19L1(2)
0.003 1.000 2.05e-2 2.23e-2 ✓ sig. —
Anaphylatoxin inactivator deficiency Nonalcoholic fatty liver disease
1 gene
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1 of 1 corroborated by 2+ sources
CPN1(2)
0.003 1.000 2.05e-2 2.23e-2 ✓ sig. —
methylmalonic aciduria and homocystinuria type cblF Nonalcoholic fatty liver disease
1 gene
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1 of 1 corroborated by 2+ sources
LMBRD1(2)
0.003 1.000 2.05e-2 2.23e-2 ✓ sig. —
Hyperprolinemia Nonalcoholic fatty liver disease
1 gene
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1 of 1 corroborated by 2+ sources
ALDH4A1(7)
0.003 0.500 4.06e-2 4.25e-2 ✓ sig. —
Intestinal vascular insufficiency Nonalcoholic fatty liver disease
1 gene
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NEDD9(1)
0.003 0.500 4.06e-2 4.25e-2 ✓ sig. —
Nonalcoholic fatty liver disease Primary microcephaly-mild intellectual disability-young-onset diabetes syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TRMT10A(3)
0.003 0.500 4.06e-2 4.25e-2 ✓ sig. —
Atelis syndrome Nonalcoholic fatty liver disease
1 gene
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1 of 1 corroborated by 2+ sources
SLF2(4)
0.003 0.500 4.06e-2 4.25e-2 ✓ sig. —
Nonalcoholic fatty liver disease Thiamine-responsive maple syrup urine disease
1 gene
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1 of 1 corroborated by 2+ sources
BCKDHB(2)
0.003 0.333 6.03e-2 6.20e-2 —

Showing 24 of 49 matching pairs, sorted by significance (ascending). Click a column header to sort.