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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Atrial flutter Progressive myoclonic epilepsy with intracellular inclusions
1 gene
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1 of 1 corroborated by 2+ sources
PRDM8(3)
0.012 1.000 5.26e-3 6.42e-3 ✓ sig. —
Cortical dysplasia-focal epilepsy syndrome Idiopathic pulmonary fibrosis
1 gene
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1 of 1 corroborated by 2+ sources
CNTNAP2(4)
0.012 1.000 5.33e-3 6.49e-3 ✓ sig. —
Congenital cataract hearing loss developmental delay syndrome Partial epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
SLC33A1(3)
0.022 0.500 5.71e-3 6.93e-3 ✓ sig. —
Intellectual developmental disorder, x-linked X-linked epilepsy with learning disability and behavior disorder syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SYN1(4)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Intellectual developmental disorder, x-linked X-linked epilepsy with variable learning disabilities and behavior disorders
1 gene
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1 of 1 corroborated by 2+ sources
SYN1(5)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Intellectual developmental disorder, x-linked X-linked epilepsy-learning disabilities-behavior disorders syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SYN1(5)
0.011 1.000 5.78e-3 7.00e-3 ✓ sig. —
Lafora disease Rolandic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
EPM2A(4)
0.020 0.500 6.10e-3 7.33e-3 ✓ sig. —
Lymphatic system disease Rolandic epilepsy
1 gene
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PTPRM(1)
0.020 0.500 6.10e-3 7.33e-3 ✓ sig. —
Microcephaly, epilepsy, and diabetes syndrome Rolandic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
IER3IP1(5)
0.020 0.500 6.10e-3 7.33e-3 ✓ sig. —
Primary microcephaly-epilepsy-permanent neonatal diabetes syndrome Rolandic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
IER3IP1(3)
0.020 0.500 6.10e-3 7.33e-3 ✓ sig. —
Cardiac arrhythmia Progressive myoclonic epilepsy with intracellular inclusions
1 gene
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1 of 1 corroborated by 2+ sources
PRDM8(3)
0.010 1.000 6.36e-3 7.63e-3 ✓ sig. —
Congenital disorder of glycosylation congenital muscular dystrophy with intellectual disability and severe epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
DPM2(4)
0.010 1.000 6.43e-3 7.68e-3 ✓ sig. —
Bipolar depression X-linked epilepsy with or without intellectual disability and dysmorphic features
1 gene
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1 of 1 corroborated by 2+ sources
GABRA3(4)
0.009 1.000 6.82e-3 8.09e-3 ✓ sig. —
1p36.33 duplication syndrome Cerebellar hypoplasia/atrophy, epilepsy, and global developmental delay
1 gene
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1 of 1 corroborated by 2+ sources
ATAD3A(2)
0.026 0.333 7.00e-3 8.28e-3 ✓ sig. —
complex neurodevelopmental disorder Epilepsy due to perinatal stroke
1 gene
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1 of 1 corroborated by 2+ sources
ST3GAL3(2)
0.008 1.000 7.66e-3 8.95e-3 ✓ sig. —
complex neurodevelopmental disorder Intellectual developmental disorder seizures epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
AP2M1(3)
0.008 1.000 7.66e-3 8.95e-3 ✓ sig. —
Mitochondrial complex deficiency neurodevelopmental disorder with microcephaly, impaired language, epilepsy, and gait abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
NARS1(2)
0.008 1.000 7.73e-3 9.02e-3 ✓ sig. —
Epilepsy due to perinatal stroke Peptic ulcer disease
1 gene
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1 of 1 corroborated by 2+ sources
ST3GAL3(2)
0.008 1.000 7.86e-3 9.14e-3 ✓ sig. —
15q13.3 microdeletion syndrome Generalized epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
CHRNA7(5)
0.015 0.500 8.43e-3 9.76e-3 ✓ sig. —
Epilepsy due to perinatal stroke Nonsyndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
ST3GAL3(2)
0.007 1.000 9.16e-3 1.05e-2 ✓ sig. —
Nonsyndromic intellectual disability Progressive myoclonic epilepsy with renal failure
1 gene
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1 of 1 corroborated by 2+ sources
SEMA6B(5)
0.007 1.000 9.16e-3 1.05e-2 ✓ sig. —
Developmental disability Hyperekplexia epilepsy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ARHGEF9(2)
0.007 1.000 9.29e-3 1.06e-2 ✓ sig. —
Developmental disability neurodevelopmental disorder with microcephaly, impaired language, epilepsy, and gait abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
NARS1(2)
0.007 1.000 9.29e-3 1.06e-2 ✓ sig. —
Genetic generalized epilepsy Liver neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
TNK2(2)
0.007 1.000 9.87e-3 1.12e-2 ✓ sig. —
Early onset epilepsy with developmental delay Psoriasis vulgaris
1 gene
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1 of 1 corroborated by 2+ sources
SETD1A(5)
0.018 0.333 1.05e-2 1.18e-2 ✓ sig. —

Showing 25 of 420 matching pairs, sorted by significance (ascending). Click a column header to sort.