Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
9871
Gene name Gene Name - the full gene name approved by the HGNC.
SEC24 homolog D, COPII component
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
SEC24D
Synonyms (NCBI Gene) Gene synonyms aliases
CLCRP2
Disease Acronyms (UniProt) Disease acronyms from UniProt database
CLCRP2
Chromosome Chromosome number
4
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
4q26
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene is a member of the SEC24 subfamily of the SEC23/SEC24 family, which is involved in vesicle trafficking. The encoded protein has similarity to yeast Sec24p component of COPII. COPII is the coat protein complex responsible f
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs148676365 C>T Pathogenic Coding sequence variant, missense variant, 5 prime UTR variant
rs730882211 C>G Likely-pathogenic Missense variant, coding sequence variant, genic upstream transcript variant
rs759594785 ->G Pathogenic Coding sequence variant, genic upstream transcript variant, frameshift variant
rs760670617 G>A,C Pathogenic Coding sequence variant, missense variant
rs786204845 G>A Pathogenic Stop gained, coding sequence variant, genic upstream transcript variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT001230 hsa-miR-605-5p qRT-PCR, Western blot 19336450
MIRT001230 hsa-miR-605-5p qRT-PCR, Western blot 19336450
MIRT016795 hsa-miR-335-5p Microarray 18185580
MIRT022130 hsa-miR-124-3p Microarray 18668037
MIRT024462 hsa-miR-215-5p Microarray 19074876
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000139 Component Golgi membrane IEA
GO:0000149 Function SNARE binding IBA 21873635
GO:0000149 Function SNARE binding IPI 18843296
GO:0001701 Process In utero embryonic development IEA
GO:0002474 Process Antigen processing and presentation of peptide antigen via MHC class I TAS
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
607186 10706 ENSG00000150961
Protein
UniProt ID O94855
Protein name Protein transport protein Sec24D (SEC24-related protein D)
Protein function Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicle
PDB 3EFO , 3EG9 , 5KYU , 5KYW , 5KYX , 5KYY
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF04810 zf-Sec23_Sec24 360 398 Sec23/Sec24 zinc finger Domain
PF04811 Sec23_trunk 437 681 Sec23/Sec24 trunk domain Domain
PF08033 Sec23_BS 686 770 Sec23/Sec24 beta-sandwich domain Domain
PF04815 Sec23_helical 781 883 Sec23/Sec24 helical domain Domain
PF00626 Gelsolin 899 974 Gelsolin repeat Domain
Tissue specificity TISSUE SPECIFICITY: Ubiquitously expressed, with higher amounts in placenta, pancreas, heart and liver. {ECO:0000269|PubMed:10329445}.
Sequence
MSQQGYVATPPYSQPQPGIGLSPPHYGHYGDPSHTASPTGMMKPAGPLGATATRGMLPPG
PPPPGPHQFGQNGAHATGHPPQRFPGPPPVNNVASSHAPYQPSAQSSYPGPISTSSVTQL
GSQLSAMQINSYGSGMAPPSQGPPGPLSATSLQTPPRPPQPSILQPGSQVLPPPPTTLNG
PGASPLPLPMYRPDGLSGPPPPNAQYQPPPLPGQTLGAGYPPQQANSGPQMAGAQLSYPG
GFPGGPAQMAGPPQPQKKLDPDSIPSPIQVIENDRASRGGQVYATNTRGQIPPLVTTDCM
IQDQGNASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLYLVNHGESGP
VRCNRCKAYMCPFMQFIEGGRRYQCGFCNCVNDVPPFY
FQHLDHIGRRLDHYEKPELSLG
SYEYVATLDYCRKSKPPNPPAFIFMIDVSYSNIKNGLVKLICEELKTMLEKIPKEEQEET
SAIRVGFITYNKVLHFFNVKSNLAQPQMMVVTDVGEVFVPLLDGFLVNYQESQSVIHNLL
DQIPDMFADSNENETVFAPVIQAGMEALKAADCPGKLFIFHSSLPTAEAPGKLKNRDDKK
LVNTDKEKILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLYK
YNNFQMHLDRQQFLNDLRNDI
EKKIGFDAIMRVRTSTGFRATDFFGGILMNNTTDVEMAA
IDCDKAVTVEFKHDDKLSEDSGALIQCAVLYTTISGQRRLRIHNLGLNCS
SQLADLYKSC
ETDALINFFAKSAFKAVLHQPLKVIREILVNQTAHMLACYRKNCASPSAASQLILPDSMK
VLPVYMNCLLKNCVLLSRPEISTDERAYQRQLVMTMGVADSQL
FFYPQLLPIHTLDVKST
MLPAAVRCSESRLSEEGIFLLANGLHMFLWLGVSSPPELIQGIFNVPSFAHINTDMTLLP
EVGNPYSQQLRMIM
GIIQQKRPYSMKLTIVKQREQPEMVFRQFLVEDKGLYGGSSYVDFL
CCVHKEICQLLN
Sequence length 1032
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Protein processing in endoplasmic reticulum
Pathogenic Escherichia coli infection
  COPII-mediated vesicle transport
MHC class II antigen presentation
Cargo concentration in the ER
Antigen Presentation: Folding, assembly and peptide loading of class I MHC
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Cole carpenter syndrome Cole Carpenter syndrome, COLE-CARPENTER SYNDROME 2, Cole-Carpenter syndrome rs786204843, rs760670617, rs786204845, rs786204846, rs759594785, rs1578383414, rs1182434832, rs1578456973, rs1372766642 25683121, 27942778
Coronal craniosynostosis Coronal craniosynostosis rs1566992093
Dentinogenesis imperfecta Dentinogenesis Imperfecta rs121912985, rs1560477489, rs121912987, rs121912989, rs1560480632, rs67707918, rs66883877
Developmental delay Global developmental delay rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291
View all (32 more)
Unknown
Disease term Disease name Evidence References Source
Myocardial infarction Myocardial Infarction 25948407 ClinVar
Cole Carpenter Syndrome Cole-Carpenter syndrome GenCC
Osteogenesis Imperfecta osteogenesis imperfecta type 1 GenCC
Associations from Text Mining
Disease Name Relationship Type References
Glioma Associate 31761927
Neoplasms Associate 31761927